Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
(245 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47900.1 68414.m05334 expressed protein 31 0.95
At4g10930.1 68417.m01778 expressed protein 29 3.8
At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family pr... 28 5.1
At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr... 28 5.1
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote... 28 5.1
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote... 28 5.1
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 28 6.7
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 27 8.8
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 46 VSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNSTVRKEIDFN 105
V+ H ++ E+ K A P+ ++ + I S S + KS + ILD T ++ D
Sbjct: 516 VNSHVELMDDFLEMEKLACLPNLSSSN--GSIDSKDGSGDQKSEMVILDAHTDLEDSDRG 573
Query: 106 SPGVVK 111
SP V+K
Sbjct: 574 SPAVMK 579
>At4g10930.1 68417.m01778 expressed protein
Length = 984
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 40 PHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLT 91
P + + E++K LPK + A ++ K S ++S + ++G+ NLT
Sbjct: 429 PKEMGNSQNNGKPTEASKTLPKISAAKGSSVKAAGSKLNSGNKQSDGQPNLT 480
>At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 241
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 73 PISPIHSVHNSTEGKSNLTILDNSTVRKEIDFNS 106
P+ + H + ++N T+LDN V K+++ N+
Sbjct: 35 PLPDLTVTHENVSSENNRTLLDNPVVMKKLNHNA 68
>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 242
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 73 PISPIHSVHNSTEGKSNLTILDNSTVRKEIDFNS 106
P+ + H + ++N T+LDN V K+++ N+
Sbjct: 35 PLPDLTVTHENVSSENNRTLLDNPVVMKKLNHNA 68
>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 977
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 115 IVFGGFALLAVAYFIFYRSKHKSNEANTM-HSSIDANQFRYGVLQSEDRRDNLESSRI 171
IVFG LLA F Y K + E ++ H S FR +D D+++ +
Sbjct: 614 IVFGLLILLASLVFFLYLKKTEKKEGRSLKHESWSIKSFRKMSFTEDDIIDSIKEENL 671
>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 976
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 115 IVFGGFALLAVAYFIFYRSKHKSNEANTM-HSSIDANQFRYGVLQSEDRRDNLESSRI 171
IVFG LLA F Y K + E ++ H S FR +D D+++ +
Sbjct: 614 IVFGLLILLASLVFFLYLKKTEKKEGRSLKHESWSIKSFRKMSFTEDDIIDSIKEENL 671
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 40 PHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNSTVR 99
P +S + E K+L + + + +DPISP +S E + + N++
Sbjct: 38 PDCESEDEDEKEEKEKEKQLRPRSSSFNRRGRDPISPRKGGFSSNESWTGTSNYSNTSAN 97
Query: 100 KEI--DFNSPGVVKRG 113
+E+ ++ G RG
Sbjct: 98 RELSRSYSGRGSTGRG 113
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 114 AIVFGGFALLAVAYFIFYRSKHKSNEANTMHSSI 147
AI+F F L YF+FYR E T+ SS+
Sbjct: 13 AIIF--FTLFGTIYFMFYRKVKSHQENKTIASSL 44
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.128 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,147,938
Number of Sequences: 28952
Number of extensions: 192926
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 8
length of query: 245
length of database: 12,070,560
effective HSP length: 79
effective length of query: 166
effective length of database: 9,783,352
effective search space: 1624036432
effective search space used: 1624036432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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