Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   1.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   5.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   5.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   5.0  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    24   5.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   5.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 341 SLKEITDYHVKNPLGVPGEGILGKVIRKHTLRHSGKVFGAA 381
           +LK   + H KNP    GE I+  +I K TL      F  A
Sbjct: 98  TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 138


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory
          receptor candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 57 KCVQPKPSKNCVAYVISDVITHNLPLYY 84
          KC + K  KNC   +I  +I   + LY+
Sbjct: 32 KCQRLKTDKNCTIVIIFHLILFAVLLYF 59


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
          protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 24 DNMATLPVGQHRQQGSDIAIAEKHNTANKEM 54
          D+M    +GQH   G+ ++ A   + A+  M
Sbjct: 65 DSMVNYTLGQHHHNGAAVSAASSVSAASASM 95


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 24  DNMATLPVGQHRQQGSDIAIAEKHNTANKEM 54
           D+M    +GQH   G+ ++ A   + A+  M
Sbjct: 124 DSMVNYTLGQHHHNGAAVSAASSVSAASASM 154


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
          protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 24 DNMATLPVGQHRQQGSDIAIAEKHNTANKEM 54
          D+M    +GQH   G+ ++ A   + A+  M
Sbjct: 65 DSMVNYTLGQHHHNGAAVSAASSVSAASASM 95


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 24  DNMATLPVGQHRQQGSDIAIAEKHNTANKEM 54
           D+M    +GQH   G+ ++ A   + A+  M
Sbjct: 124 DSMVNYTLGQHHHNGAAVSAASSVSAASASM 154


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,856
Number of Sequences: 317
Number of extensions: 6892
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 853
length of database: 114,650
effective HSP length: 63
effective length of query: 790
effective length of database: 94,679
effective search space: 74796410
effective search space used: 74796410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)