Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698...    31   3.9  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    30   6.8  

>12_02_0592 +
           20868884-20868954,20869091-20869216,20869554-20869862,
           20870017-20870300,20870410-20871305,20871586-20871642,
           20872293-20872340,20873046-20873114
          Length = 619

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 485 VNAVTTLMPSSTPKSFVTDKDVWADNVET-YRVDDPPHYPDNKTTVIFESFDNLNPAAL- 542
           VN+    +PS+   +FV D D   DN +    +DD      NK        + L+  A  
Sbjct: 503 VNSSFRSVPST---AFVEDSDSEQDNTKNGANLDDYLMEKMNKDLQAVNLEEPLSWQAYN 559

Query: 543 IANIDNTTVCGRNPIMGTIVSDSAPYLYPFI---IEYSLIGAAVIYVMWKHIGRYPSVA 598
            A +    V G   + G  +   +  +YP +   +EYS+  ++  Y++W  +G+ PS A
Sbjct: 560 YAKVSFKIVGGT--LSGLTIDPKSVTIYPSVKAPVEYSMQASSGDYILWNTLGKCPSAA 616


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 506 VWADNVETYRVDDPPHY--PDNKTTVIFESFDNLNPAALIANID 547
           +W + V  +   +P  Y  P N  +V  ++F+ LNP A++  +D
Sbjct: 160 MWLEGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVD 203


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,213,249
Number of Sequences: 37544
Number of extensions: 759603
Number of successful extensions: 2004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2004
Number of HSP's gapped (non-prelim): 2
length of query: 853
length of database: 14,793,348
effective HSP length: 88
effective length of query: 765
effective length of database: 11,489,476
effective search space: 8789449140
effective search space used: 8789449140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 64 (29.9 bits)