Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-05
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 47   6e-05
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.0  
SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)                  31   3.9  
SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.2  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.2  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 47.6 bits (108), Expect = 4e-05
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 779  RQAVTFLLICNVTMWLIYTFEAQ-KVLANPVQLDFYGFVAWSLVQRFTLPLCIFHRFHSA 837
            RQ    L I N  +W + TFE   K + NP ++       WS+V+    PLCIF R HS 
Sbjct: 1540 RQIAALLSIVNFALWAMNTFEINFKEMNNP-EISVIDSTVWSVVRHIAYPLCIFFRLHSV 1598

Query: 838  VTLAEI 843
                EI
Sbjct: 1599 FCCFEI 1604



 Score = 33.9 bits (74), Expect = 0.55
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 529  VIFESFDNLNPAALIANIDNTTVCGRNPIMGTIVSDSAPYLYPFIIEYSLIGAAVIYVMW 588
            +I ES +++ P         +  C     M  ++  +  +LYPF IEYS++ + +++ +W
Sbjct: 1262 IIEESAEDMKPTKPPNTYSQS--CNATMAMENLIKKANYFLYPFEIEYSVMSSGLLFNLW 1319

Query: 589  KHIGRYP 595
              + + P
Sbjct: 1320 YSLKQPP 1326



 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 292  QMVFTFMQMYFIFMNSRLNIHRFKVIARFGLMHVVATNICVWIRTLVLESLKEI 345
            + VF   Q+YF    S  +    +  + F LMH++  N+C W   ++ ES +++
Sbjct: 1218 KFVFLNFQLYFFCRFSNKSFFN-RWGSSFFLMHIIGVNMCSWFYVIIEESAEDM 1270


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 47.2 bits (107), Expect = 6e-05
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 242 HSHGSFFLRIGAIAFGLGTMIYNGLEFGTFFELPLESPCYLILKGVNPVLQMVFTFMQMY 301
           HSH    L  GA  FG G+ + + L    + E     P          V + VF F Q+ 
Sbjct: 159 HSHRP--LMAGAYVFGAGSCVMDLLHIAFYVECSSNLPSLFF-----SVFKAVFIFSQIL 211

Query: 302 FIFMNSRLNIHRFKVIARFGLMHVVATNICVWIRTLVLES 341
           F+   +   +H+   I R  L H++ TN+C+W R L   S
Sbjct: 212 FLRKFATATLHKSPSI-RLVLFHILGTNVCIWFRALFSHS 250



 Score = 41.5 bits (93), Expect = 0.003
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 558 MGTIVSDSAPYLYPFIIEYSLIGAAVIYVMW 588
           M  I   S PYLYPF +EYSLI   ++Y MW
Sbjct: 277 MSKIWEASEPYLYPFTMEYSLIAGGILYNMW 307


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 444 KEWPNDNPFTSVATEADKVTQTQTAMLEIFHFPFTSTVKSIVNAVTTLMP-SSTPKSFVT 502
           K W  +N F  ++ EA    +       I H+PF +  ++    +  L+P  +TP + +T
Sbjct: 322 KGW--ENAFLKLSWEAVDTMRVHYDFSSIMHYPFDAFSRNNKRTLLPLIPVKATPYTKLT 379

Query: 503 DKDVWADNV 511
           D+DV   N+
Sbjct: 380 DRDVLKVNL 388


>SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
          Length = 502

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 455 VATEADKVTQTQTAMLEIFHFPFTSTVKSIVNAVTTLMPSSTPKSFV 501
           V+ EA  +T+T T   +I HFP+  TVK    ++ +  P+S  K+ V
Sbjct: 88  VSFEAVWLTKTTTNKAKIIHFPWMRTVKHPGGSLLSQQPASFEKAAV 134


>SB_55281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 370 TLRHSGKVFGAATTAVTGIASTAMTTAKATGEQLLNQQPLCHNNMGSILPKSKLIDTIKS 429
           TLR S +V      AV  + S  +     +G  L+    +   N  +I+ K+ L D I  
Sbjct: 15  TLRES-RVMQGPGDAVWILTSAFIIFTMISGFGLVESGMVSRKNEANIMVKNAL-DVIFG 72

Query: 430 TIGY---GNGMGYGREYKEWPNDNPFTSVATEADKVTQTQTAMLEIFHFPFTSTVKSIVN 486
            +G+   G    +G++ K     + F    T+AD+    +   L +F   F +T  +IV+
Sbjct: 73  GLGFWMFGFAFTFGKDLKHTNAFSGFGRFFTDADENDMGEIFSLYLFQASFATTATTIVS 132


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 462 VTQTQTAMLEIFHFPFTSTVKSIVNAVTTLMPSSTPKSFVTDKDVW 507
           +T T++ +LE++H  +T  ++   +AVTT      P   + D  +W
Sbjct: 954 LTATESQVLEVYHSSYTIYLRVGTDAVTTPAAMFVPNLRINDLRIW 999


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,208,407
Number of Sequences: 59808
Number of extensions: 879415
Number of successful extensions: 2540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 13
length of query: 853
length of database: 16,821,457
effective HSP length: 88
effective length of query: 765
effective length of database: 11,558,353
effective search space: 8842140045
effective search space used: 8842140045
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 64 (29.9 bits)