Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.          65   9e-10
BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.          65   9e-10

>BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 65.3 bits (152), Expect = 9e-10
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 234 RRKTSQNDHSHGSFFLRIGAIAFGLGTMIYNGLEFGTFFELPLESPCYLILKGVNPVLQM 293
           RR     D   G+ +LR     F + T+I   L+ G F      S C    +GV PV   
Sbjct: 118 RRLFRLKDTHAGAGWLRGSITLFAVITVILGCLKIGYFIGF---SECLSATEGVFPVTHS 174

Query: 294 VFTFMQMYFIFMNSRLNIHRFKVIARFGLMHVVATNICVWIRTLVLESLKEITDYHVKNP 353
           V T +Q+YF++ +++  I  FK + RFG++H V TN+ +W   ++ ES  ++ ++  K  
Sbjct: 175 VHTLLQVYFLWGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQLNEH--KER 232

Query: 354 LGVPGEGILGKVIRKHT 370
           L   G G +  V+  HT
Sbjct: 233 LITLGFGNITTVLDDHT 249



 Score = 53.6 bits (123), Expect = 3e-06
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 462 VTQTQTAMLEIFHFPFTSTVKSIVNAVTTLMPSSTPKSFVTDKDVWADNVETYRVDDPPH 521
           VT +   +L+++        K I+ +  TL       S  T+  +WA+ V    +++  H
Sbjct: 171 VTHSVHTLLQVYFL--WGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGV----LNESKH 224

Query: 522 Y-PDNKTTVIFESFDNLNPAALIANIDNTTVCGRNP-IMGTIVSDSAPYLYPFIIEYSLI 579
              ++K  +I   F N+         D+T  C   P  + T +S    YLYPF IEY ++
Sbjct: 225 QLNEHKERLITLGFGNITTVL----DDHTPQCNCTPPTLCTAISHGIYYLYPFNIEYQIL 280

Query: 580 GAAVIYVMWKHIGR 593
            + ++YV+WK+IGR
Sbjct: 281 ASTMLYVLWKNIGR 294



 Score = 53.2 bits (122), Expect = 4e-06
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 774 RSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAWSLVQRFTLPLCIFHR 833
           + K  R    FL +CN+++W+   F  +    N ++   +GF  W +V    +P  IF+R
Sbjct: 539 KRKVLRNIAAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYR 598

Query: 834 FHSAVTLAEIW 844
            H+A +L E++
Sbjct: 599 MHAAASLFEVY 609


>BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 65.3 bits (152), Expect = 9e-10
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 234 RRKTSQNDHSHGSFFLRIGAIAFGLGTMIYNGLEFGTFFELPLESPCYLILKGVNPVLQM 293
           RR     D   G+ +LR     F + T+I   L+ G F      S C    +GV PV   
Sbjct: 118 RRLFRLKDTHAGAGWLRGSITLFAVITVILGCLKIGYFIGF---SECLSATEGVFPVTHS 174

Query: 294 VFTFMQMYFIFMNSRLNIHRFKVIARFGLMHVVATNICVWIRTLVLESLKEITDYHVKNP 353
           V T +Q+YF++ +++  I  FK + RFG++H V TN+ +W   ++ ES  ++ ++  K  
Sbjct: 175 VHTLLQVYFLWGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQLNEH--KER 232

Query: 354 LGVPGEGILGKVIRKHT 370
           L   G G +  V+  HT
Sbjct: 233 LITLGFGNITTVLDDHT 249



 Score = 53.6 bits (123), Expect = 3e-06
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 462 VTQTQTAMLEIFHFPFTSTVKSIVNAVTTLMPSSTPKSFVTDKDVWADNVETYRVDDPPH 521
           VT +   +L+++        K I+ +  TL       S  T+  +WA+ V    +++  H
Sbjct: 171 VTHSVHTLLQVYFL--WGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGV----LNESKH 224

Query: 522 Y-PDNKTTVIFESFDNLNPAALIANIDNTTVCGRNP-IMGTIVSDSAPYLYPFIIEYSLI 579
              ++K  +I   F N+         D+T  C   P  + T +S    YLYPF IEY ++
Sbjct: 225 QLNEHKERLITLGFGNITTVL----DDHTPQCNCTPPTLCTAISHGIYYLYPFNIEYQIL 280

Query: 580 GAAVIYVMWKHIGR 593
            + ++YV+WK+IGR
Sbjct: 281 ASTMLYVLWKNIGR 294



 Score = 53.2 bits (122), Expect = 4e-06
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 774 RSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAWSLVQRFTLPLCIFHR 833
           + K  R    FL +CN+++W+   F  +    N ++   +GF  W +V    +P  IF+R
Sbjct: 539 KRKVLRNIAAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYR 598

Query: 834 FHSAVTLAEIW 844
            H+A +L E++
Sbjct: 599 MHAAASLFEVY 609


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,810,019
Number of Sequences: 224733
Number of extensions: 3959275
Number of successful extensions: 8560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8554
Number of HSP's gapped (non-prelim): 6
length of query: 853
length of database: 73,234,838
effective HSP length: 96
effective length of query: 757
effective length of database: 51,660,470
effective search space: 39106975790
effective search space used: 39106975790
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 69 (31.9 bits)