GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    35   0.041
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    30   1.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   6.3  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    27   8.3  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 360 GILGKVIRKHTLRHSGKVFGAATTAVTGIASTAMTTAKATGEQLLNQQPLCHNNMGSILP 419
           G  G      T+ HSG   G  T  V     T +TT    G        L  +   SI+ 
Sbjct: 637 GYTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYSGSVTTTLTGSGSNSIVT 696

Query: 420 KSKLIDTIKSTIGYGNGMGYGREYKEWPNDNPFTSVATEADKVTQTQTAMLEIFHFPFTS 479
           ++  + T  S + Y    GY      W      TS+ T +   T   T  +E      T+
Sbjct: 697 ETVDVPTTTS-VNY----GYTTITTGWTGSTTLTSIVTHSGSETGPTTVYIETPSVSATT 751

Query: 480 TVKSI---VNAVTTLMPSSTP 497
           T  +I    +  TTL  SS P
Sbjct: 752 TTTTIGYSGSLTTTLTGSSGP 772


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 345 ITDYHVKNPLGVPGEGILGKVIRKHTLRHSGKV 377
           I  Y ++NP  +P  G  G++++   L H GK+
Sbjct: 177 IHQYKIENPWSIPATGPHGRLLKGDVLAHVGKI 209


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 816 VAWSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKA 850
           + WS +  FT P+ +   F S  T+ E  K + KA
Sbjct: 245 MGWSFILCFTTPVWVLSGFESCATIVEEAKNASKA 279


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 317 IARFGLMHVVATNICVWIRTLVLESLKEITDYHVKNPLGVPGEGILGKVIRKHTLRHSGK 376
           +A + L+  +A+  CV ++   L     +    +    G+P +G+L  +I       SGK
Sbjct: 178 MALWKLVPAIASGNCVVLKPSELAPWSCLEFALICKEAGLP-DGVLNVIIG------SGK 230

Query: 377 VFGAATTAVTGIASTAMTTAKATGEQLLN 405
             GAA +    IA  A T + ATG+++++
Sbjct: 231 ESGAALSCHPKIAYLAFTGSLATGKKIMH 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,712
Number of Sequences: 5004
Number of extensions: 127589
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 10
length of query: 853
length of database: 2,362,478
effective HSP length: 79
effective length of query: 774
effective length of database: 1,967,162
effective search space: 1522583388
effective search space used: 1522583388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)