GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001261-TA|BGIBMGA001261-PA|IPR004878|Protein of unknown
function DUF270
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40745.1 68415.m05027 expressed protein                             32   1.8  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    31   2.4  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    31   2.4  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    30   5.6  
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ...    30   7.5  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   9.9  

>At2g40745.1 68415.m05027 expressed protein
          Length = 137

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 422 KLIDTIKSTIGYGNGMGYGREYKEWPNDN---PFTSVATEADKVTQTQTAMLEIFHFPFT 478
           KL+  I  TIG  NG  Y  + + W N+N       VATE D     +  + +  +FP  
Sbjct: 14  KLLVNIFGTIGVTNGRPYQYKVEAWTNENEKHETKVVATEGDPEFDEELQLFQDQNFPVE 73

Query: 479 STVKSIVNAVTT 490
           S    +    +T
Sbjct: 74  SLYVDVFKTNST 85


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 411 HNNMGSILPKSKLIDTIKSTIGYGNGMGYGREYKEWPNDNPFTSVATEADKVTQTQTAML 470
           HNN+  ++P+ +  +T  +   +GN +  G+      N+N +     EAD   +   +++
Sbjct: 860 HNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSY----EEADNGVEADESII 915

Query: 471 EI--FHFPFTSTVKSIVNAVTTLMPSSTPKS 499
           ++  F+  F +   +I+  +   +   +P S
Sbjct: 916 DMVSFYLSFAAAYVTILIGILASLSFDSPWS 946


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 478 TSTVKSIVNAVTTLMPSSTPKSFVTD--KDVWADNVETYRVDDPPHYPDNKTTVIFESFD 535
           TST+ ++V+ V T MPS+T    +    + +W  N E Y   D    P +   +  E+ D
Sbjct: 27  TSTIPTMVSPVLTNMPSATSPLLMVPPLRTIWPSNKEWY---DGDAGPSSTGPIKREASD 83

Query: 536 NLNPAA 541
           N N  A
Sbjct: 84  NTNDTA 89


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 378 FGAATTAVTGIASTAMTTAKATGEQLLNQQPLCHNNMGSILPKSKLIDTIKSTIGYGNGM 437
           F AATTAV G+ S  ++  ++  +       L     G +  +++L+  ++ + G GN  
Sbjct: 214 FAAATTAVLGVPSPCLSKTRSFDDSPPAAAELRRMRKGDLEEETELLQALQLSQGQGNDP 273

Query: 438 GYGREYKEWPNDNPFT------------------SVATEADKVTQTQTAMLEIFHFPFTS 479
                      D+ FT                     T+ DK ++    M+++  FP T 
Sbjct: 274 TPNTNGDSTNQDSAFTFSDASPTSTHITNISQLDQFKTDDDKASENDGNMIKVGKFPTTI 333

Query: 480 TVKS 483
           T KS
Sbjct: 334 TTKS 337


>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 517 DDPPHYPDNKTTVIFESFDNLNPAALIANIDNTTVC 552
           ++ P Y DNK  +  E FD  +P     ++ N T+C
Sbjct: 192 EEAPDYADNKCLLCEEEFDQQHPKIHHCDVCNFTIC 227


>At1g74170.1 68414.m08590 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
            pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 411  HNNMGSILPKSKLIDTIKSTIGYGNGMGYGREYKEWPNDNPF--TSVATEADKVTQTQTA 468
            +NN+  I+P+ +  +T ++   +GN +  G+        N F  T    EAD+     T 
Sbjct: 928  YNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEADE----STV 983

Query: 469  MLEIFHFPFTSTVKSIVNAVTTLMPSSTPKS 499
             +E F++ F +   +I+  +   +   +P S
Sbjct: 984  DMESFYWSFVAAYVTILLGILASLSFDSPWS 1014


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,599,106
Number of Sequences: 28952
Number of extensions: 636136
Number of successful extensions: 1726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 11
length of query: 853
length of database: 12,070,560
effective HSP length: 87
effective length of query: 766
effective length of database: 9,551,736
effective search space: 7316629776
effective search space used: 7316629776
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 63 (29.5 bits)