GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001260-TA|BGIBMGA001260-PA|undefined
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340...    33   0.050
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446...    28   1.9  
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053     27   3.3  
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378...    26   7.6  

>01_06_0912 +
           32933362-32933515,32933628-32933697,32933893-32934035,
           32934127-32934637,32934693-32934729,32935254-32935350,
           32936774-32937153
          Length = 463

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 23  DQKEIREVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPARAPL 65
           DQK++ EV    APD  E    T+  ++ D  G   S + APL
Sbjct: 139 DQKQVEEVTTTTAPDSDERSPKTLPPVDEDSPGEPASRSTAPL 181


>11_04_0301 +
          16142236-16142945,16143748-16144247,16144557-16144649,
          16144879-16145005,16145265-16145468,16145587-16145692
          Length = 579

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 28 REVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPARAPLV 66
          R VP    P+H     G IV LN  G   H  PA  P++
Sbjct: 14 RNVPLKFIPEHHAVYSGRIVTLNKSGVVGH-RPAPPPVL 51


>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
          Length = 576

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 7   IHEMKERLLGAPVEVPDQKEIREVPRDRAPD--HQETQVGTIVK 48
           + E+K R  GA +   D    +  PRD + D   +ET+ G I+K
Sbjct: 184 VFEIKRRESGAAIVCSDGLSQKRQPRDMSVDWFEEETKSGDIIK 227


>12_02_0969 -
           24936399-24936699,24936779-24936949,24937032-24937852,
           24937946-24938407,24938486-24938890
          Length = 719

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 12  ERLLGAPVEVPDQKEIREVPRDRAPDHQETQVGT 45
           ++LLG   E   Q E+  VP+ R  D     +GT
Sbjct: 133 QKLLGLVAEQASQSEVESVPKRREDDILTKALGT 166


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,375
Number of Sequences: 37544
Number of extensions: 91034
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)