GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001260-TA|BGIBMGA001260-PA|undefined
         (110 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    28   2.0  

>SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 41  TQVGTIVKLNSDGYGSHTSPARAPL 65
           +Q+  +VK N D  G++TSP++ P+
Sbjct: 156 SQLDNVVKKNLDSTGTYTSPSKKPV 180


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 41   TQVGTIVKLNSDGYGSHTSPARAPL 65
            +Q+  +VK N D  G++TSP++ P+
Sbjct: 1055 SQLDNVVKKNLDSTGTYTSPSKKPV 1079


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,881
Number of Sequences: 59808
Number of extensions: 108920
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 2
length of query: 110
length of database: 16,821,457
effective HSP length: 72
effective length of query: 38
effective length of database: 12,515,281
effective search space: 475580678
effective search space used: 475580678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)