GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001260-TA|BGIBMGA001260-PA|undefined
         (110 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    25   8.8  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    25   8.8  

>Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical
           protein F12F6.9 protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 23  DQKEIREVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPAR 62
           D +EIR +   +  +H+ET+ G I+    D Y   T+  R
Sbjct: 376 DDEEIRTIELPKEYEHEETR-GPIITEEEDDYPEETTTTR 414


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 18   PVEVPDQKEIREVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPARAPLV 66
            PVE  +++ +++ P D   D  E       ++NSD      S + A  V
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAV 1802


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 18   PVEVPDQKEIREVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPARAPLV 66
            PVE  +++ +++ P D   D  E       ++NSD      S + A  V
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAV 1802


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,829
Number of Sequences: 27539
Number of extensions: 76806
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 12,573,161
effective HSP length: 72
effective length of query: 38
effective length of database: 10,590,353
effective search space: 402433414
effective search space used: 402433414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)