GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001260-TA|BGIBMGA001260-PA|undefined
         (110 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    27   2.8  
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL...    25   8.6  

>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 16  GAPVEVPDQKEIREVPRDRAPDHQETQVGTIVKLNSDGYGSHTSPARAPL 65
           GA  E  D   IRE P  +     + Q GT      D  GSH+SP+ A +
Sbjct: 789 GANHETKDNGAIREAPPVKV---NQKQNGTHENHGGDKNGSHSSPSGADI 835


>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
           (PLDBETA2) / PLDdelta1 identical to SP|O23078
           Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
           beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
           Pfam profiles: PF00614 phospholipase D.active site
           motif, PF00168 C2 domain
          Length = 927

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 3   RCPYIHEMKERLLGAPVEVPDQKEIREVP-RDRAPDHQETQVGTIVKLNSD 52
           R   + EM+  L+  PVEV  + ++R +P  +  PD     VG+ + +  +
Sbjct: 874 RSEEVSEMRGHLMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVGSFLAIQEN 924


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,296
Number of Sequences: 28952
Number of extensions: 68370
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 2
length of query: 110
length of database: 12,070,560
effective HSP length: 71
effective length of query: 39
effective length of database: 10,014,968
effective search space: 390583752
effective search space used: 390583752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)