Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 8e-12
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004) 38 0.017
SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.5
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05) 30 4.5
SB_50613| Best HMM Match : 7tm_1 (HMM E-Value=0.24) 29 7.9
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.9
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 69.3 bits (162), Expect = 8e-12
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 408 LALYAMTTLASLAGMFCVRNLKYDGNRNLEL-DNILLVGAQTGMFIYGTFTIIGGHFTIE 466
+ +Y M ASL G+ C+ + + + + D +LL+ +G FI F I+ G ++
Sbjct: 1423 ILIYIMMAFASLVGINCLVHFHPSSSSSHTIVDTVLLMIGISGAFILTGFQIVVGFTELK 1482
Query: 467 KNXXXXXXX-----XXXXXXXXXCQTMFILDASRRSAKTPEQ-------LRKKPG--REI 512
QT+F++ A RSA++ + +R R+I
Sbjct: 1483 SKRDKTYVTFFLLDAVAATVQFTVQTLFVIRALLRSAESYDNEVYRDVSIRTLSWFIRQI 1542
Query: 513 VTFLLVTNLAMWAINTLEKSRAESHPVQLHFYGLWAWTIITHVSMPLAIFYRFHSTVCLC 572
L + N A+WA+NT E + E + ++ W+++ H++ PL IF+R HS C
Sbjct: 1543 AALLSIVNFALWAMNTFEINFKEMNNPEISVIDSTVWSVVRHIAYPLCIFFRLHSVFCCF 1602
Query: 573 EI 574
EI
Sbjct: 1603 EI 1604
Score = 41.1 bits (92), Expect = 0.002
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 137 YLRMGAVAFGIGSMIYS-----GLEFGQYWELERNTNCHNVLLALTPATRMAFIFIQMYF 191
YL G F +GS + G+ G E+ T + AL ++ F+ Q+YF
Sbjct: 1171 YLIFGVTFFLVGSSFLTLCKIVGILLGL--SCEKETQSYKASHALYHFSKFVFLNFQLYF 1228
Query: 192 IFLNNEMKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEI 234
F K + ++ + F LMH++G N+ W V+++E+ ++
Sbjct: 1229 -FCRFSNKSFFNRWGSSFFLMHIIGVNMCSWFYVIIEESAEDM 1270
Score = 38.7 bits (86), Expect = 0.013
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 289 CRRTNIMGTLVQDASPFLFPCTIEYSLICAAILYVMWKNISKYP 332
C T M L++ A+ FL+P IEYS++ + +L+ +W ++ + P
Sbjct: 1283 CNATMAMENLIKKANYFLYPFEIEYSVMSSGLLFNLWYSLKQPP 1326
>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
Length = 595
Score = 38.3 bits (85), Expect = 0.017
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 138 LRMGAVAFGIGSMIYSGLEFGQYWELERNTNCHNVLLALTPATRMAFIFIQMYFIFLNNE 197
L GA FG GS + L Y +E ++N ++ ++ A FIF Q+ F+
Sbjct: 164 LMAGAYVFGAGSCVMDLLHIAFY--VECSSNLPSLFFSVFKAV---FIFSQILFLRKFAT 218
Query: 198 MKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETK 231
++K + R L H++GTN+ +W L ++
Sbjct: 219 ATLHKSPSI-RLVLFHILGTNVCIWFRALFSHSR 251
Score = 38.3 bits (85), Expect = 0.017
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 295 MGTLVQDASPFLFPCTIEYSLICAAILYVMWKNI 328
M + + + P+L+P T+EYSLI ILY MW +
Sbjct: 277 MSKIWEASEPYLYPFTMEYSLIAGGILYNMWSGM 310
>SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 30.3 bits (65), Expect = 4.5
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 201 YKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEILTFYDPENKTIGLSHRLAFQKAFA-- 258
Y KI AR +VG L + + + +I + Y E + GLS +Q A A
Sbjct: 174 YTVKIYAR----DIVGFGLPLTTEIRTRRAVAKITSSYQSEFEVSGLSWETTYQFALAEW 229
Query: 259 SLATEVPPSHPAAAHLRVPRGLK 281
+ E P + AAA +++ GLK
Sbjct: 230 NKQGESPRNRSAAAPVKIAEGLK 252
>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
Length = 514
Score = 30.3 bits (65), Expect = 4.5
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 211 LMHMVGTNLSVWLNVLVQETKHEILTFYDP--ENKTIGLSHRLAFQKAFASLATEVPPSH 268
LM ++G LS L L +T+H I+ YDP +++ + L +L K F S A +H
Sbjct: 115 LMSVLGWLLSNALLALAADTRHTIVCEYDPLSDDERMPLRRQLTPYKTFTSKAVTWSRNH 174
>SB_50613| Best HMM Match : 7tm_1 (HMM E-Value=0.24)
Length = 273
Score = 29.5 bits (63), Expect = 7.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 548 AWTIITHVSMPLAIFYRFHSTVCLCEIWKRAYKMKP 583
+WTI+ V + L++F+ VC IW + ++ P
Sbjct: 129 SWTIVETVRITLSLFFLLVLVVCYIAIWIKKWENTP 164
>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.5 bits (63), Expect = 7.9
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 136 FYLRMGAVAFGIGSMIYSGLEFGQYWELERNTNCHNVLLALTPATRMAFIFIQMYFIFLN 195
F + + A+ + G+++ + FG +W + T N++L+L +A I I Y +
Sbjct: 86 FMMSIFAMPYSFGAVVVNHWPFGNFW--CQTTGFWNLVLSLAAVLTLATISIDRYIAVI- 142
Query: 196 NEMKVYKHKIVARFGLMHMVGTNLSVWLNVLV 227
+ Y+ K+ ++ L+ +V VW+ V
Sbjct: 143 -KPLQYRAKMTLQWALVMIV----FVWIQATV 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.327 0.138 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,615
Number of Sequences: 59808
Number of extensions: 583383
Number of successful extensions: 1186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 10
length of query: 586
length of database: 16,821,457
effective HSP length: 86
effective length of query: 500
effective length of database: 11,677,969
effective search space: 5838984500
effective search space used: 5838984500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 63 (29.5 bits)
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