GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
         (586 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   5.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 118  KRLSLGFALATRTHHYGSFYLRMGAVAFGIGSMIYSGLEF 157
            ++ SL F      HH+ S  ++     +G+  +++ GL F
Sbjct: 1295 RKKSLDFGKLCSLHHHLSKLIKSFNEIYGVPLLLFFGLNF 1334



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 114 QLPAKRLSLGFALATRTHHYGSFYLRMGAVAFGIGSMIYSGLEF 157
           ++  K  S+        HH+ S  +R+    FG G ++  G+ F
Sbjct: 841 KMETKAQSVALGKICTLHHHLSKLIRLFNEIFGHGLLLMFGISF 884


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,719
Number of Sequences: 317
Number of extensions: 5068
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 586
length of database: 114,650
effective HSP length: 61
effective length of query: 525
effective length of database: 95,313
effective search space: 50039325
effective search space used: 50039325
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)