GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    30   0.78 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   2.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   7.2  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 3  YNDCLNRSDALATTLSALYGKLLVVMGVAFPMAEVISTYIPPSFYEGFYLYLYIGSMVFL 62
          YN+  N S     T+ A  G L+VV G+ F  A ++ TY   SF  GF     +G  V  
Sbjct: 18 YNENTNLS---LKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGF--ISCVGQFVIT 72

Query: 63 LYMYAALVRDRTRS 76
          +    AL +   +S
Sbjct: 73 VGFRMALTQQELQS 86


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 518 VTNLAMWAINTLEKSRAESHPVQLHFYGLWAWTIITHVSMPLAIFYRFHSTVCL 571
           V N+  W +     S   +HP   H + LW    +  V   L ++  + ST C+
Sbjct: 57  VENVDAWDLTKALMSIDPNHPAHPHKWPLWKKLFVATVYTFLEVYVIWSSTACI 110


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 544 YGLWAWTII-THVSMPLAIFYRFHSTVCLC 572
           + ++ +T+I T + MPLAIF  F S VC+C
Sbjct: 138 FTMYKYTVILTALEMPLAIF--FCSIVCVC 165


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,037
Number of Sequences: 5004
Number of extensions: 86617
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 3
length of query: 586
length of database: 2,362,478
effective HSP length: 77
effective length of query: 509
effective length of database: 1,977,170
effective search space: 1006379530
effective search space used: 1006379530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)