GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899...    33   0.63 
02_04_0323 + 22026866-22027016,22029569-22029949,22030114-22031246     31   2.6  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    30   4.5  
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    30   5.9  

>07_03_1568 -
           27788314-27788619,27789125-27789294,27789868-27789979,
           27790063-27790117,27790201-27790316,27790731-27790812,
           27790974-27791228,27791326-27791454,27791539-27791747
          Length = 477

 Score = 33.1 bits (72), Expect = 0.63
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 251 LAFQKAFASLATEVPPSHPAAAHLRVPRGLKGPHHIFECRRTNIMGTLVQDA 302
           + F   + +L    PP H A  H+R+ R +  P  +  CRR +I G  V++A
Sbjct: 119 IKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVL--CRRKSIKGKTVREA 168


>02_04_0323 + 22026866-22027016,22029569-22029949,22030114-22031246
          Length = 554

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 20  LYGKLLVVMGVAFPMAEVISTYIPPSFYEGFYLYLYIGSMVFL--LYMYAALV 70
           + G++L+ + V F    VI  Y P + +   Y+YL++G  VF+  L+++A L+
Sbjct: 142 IIGRILLGVAVGFSSL-VIDRYQPINTFVHTYIYLFVGREVFMRSLHVFALLL 193


>01_01_0484 -
           3558941-3559303,3559439-3559560,3560596-3560743,
           3560853-3561491,3562154-3562450,3562553-3563407,
           3564363-3564545,3565041-3565118,3565762-3565974,
           3566075-3566238,3566357-3566445,3566761-3566891,
           3566980-3567148,3567255-3567327,3567525-3567606,
           3567677-3567808,3568743-3568818,3568965-3569065,
           3569446-3569636,3569738-3569912,3570604-3570854,
           3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 250 RLAFQKAFASLATEVPPSHPAAAHLRVPRGLKGPHHIFECRRTNIMGTLVQDASPFLFPC 309
           R A    F  L T VPP  P+AAH  +   L  PH          +  L    +  L P 
Sbjct: 37  RHAVAALFRHLLTSVPPPLPSAAHDALSSLLASPHPAVAAHAAASVARLAASRADLLSP- 95

Query: 310 TIEYSLICAAILYVMWKNISKYPSKDVAAAIAKARILEGLAYKKSPH 356
            +   L+ A +       ++    K VAA ++ A      A +  PH
Sbjct: 96  ELALPLLIAPLSASPSPRLASCFVKAVAALVSCALRSGSAASRFPPH 142


>01_05_0309 -
           20713774-20713818,20713838-20713915,20714044-20714222,
           20714296-20714556,20715222-20715393,20715501-20715662,
           20716435-20716863,20717729-20717785,20717872-20718842,
           20719098-20719182,20719269-20719637,20719756-20720001,
           20720090-20720362,20720663-20720827,20721328-20721556,
           20721727-20722168,20723152-20724138,20724352-20724517,
           20725070-20725728,20725820-20726186
          Length = 2113

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 192 IFLNNEMKVYKHKIVARFGLMHMVGT-NLSVWLNVLVQETKHEILTFYDPENKTIGLSHR 250
           ++L NE+ +Y HK  +   ++H V +    +W  + +  + H+I +F      T  L H+
Sbjct: 570 VYLLNELHIYSHKHPSFKNVLHTVNSKEKHLWSCIALSHSPHDIASFLWGPKATGVLVHK 629


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,425
Number of Sequences: 37544
Number of extensions: 528294
Number of successful extensions: 1320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 4
length of query: 586
length of database: 14,793,348
effective HSP length: 86
effective length of query: 500
effective length of database: 11,564,564
effective search space: 5782282000
effective search space used: 5782282000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 63 (29.5 bits)