GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
         (586 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.          55   8e-07
BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.          55   8e-07

>BC130432-1|AAI30433.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 54.8 bits (126), Expect = 8e-07
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 132 HYGSFYLRMGAVAFGIGSMIYSGLEFGQYWELERNTNCHNVLLALTPATRMAFIFIQMYF 191
           H G+ +LR     F + ++I   L+ G +      + C +    + P T      +Q+YF
Sbjct: 127 HAGAGWLRGSITLFAVITVILGCLKIGYFIGF---SECLSATEGVFPVTHSVHTLLQVYF 183

Query: 192 IFLNNEMKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEI 234
           ++ + +  +   K + RFG++H V TNL +W N ++ E+KH++
Sbjct: 184 LWGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQL 226



 Score = 45.2 bits (102), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 505 RKKPGREIVTFLLVTNLAMWAINTLEKSRAESHPVQLHFYGLWAWTIITHVSMPLAIFYR 564
           ++K  R I  FL + N+++W            + ++   +G   W I+ +++MP +IFYR
Sbjct: 539 KRKVLRNIAAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYR 598

Query: 565 FHSTVCLCEIW 575
            H+   L E++
Sbjct: 599 MHAAASLFEVY 609



 Score = 37.9 bits (84), Expect = 0.099
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 285 HIFECRRTN-IMGTLVQDASPFLFPCTIEYSLICAAILYVMWKNISK 330
           H  +C  T   + T +     +L+P  IEY ++ + +LYV+WKNI +
Sbjct: 248 HTPQCNCTPPTLCTAISHGIYYLYPFNIEYQILASTMLYVLWKNIGR 294


>BC130430-1|AAI30431.1|  612|Homo sapiens otopetrin 1 protein.
          Length = 612

 Score = 54.8 bits (126), Expect = 8e-07
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 132 HYGSFYLRMGAVAFGIGSMIYSGLEFGQYWELERNTNCHNVLLALTPATRMAFIFIQMYF 191
           H G+ +LR     F + ++I   L+ G +      + C +    + P T      +Q+YF
Sbjct: 127 HAGAGWLRGSITLFAVITVILGCLKIGYFIGF---SECLSATEGVFPVTHSVHTLLQVYF 183

Query: 192 IFLNNEMKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEI 234
           ++ + +  +   K + RFG++H V TNL +W N ++ E+KH++
Sbjct: 184 LWGHAKDIIQSFKTLERFGVIHSVFTNLLLWANGVLNESKHQL 226



 Score = 45.2 bits (102), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 505 RKKPGREIVTFLLVTNLAMWAINTLEKSRAESHPVQLHFYGLWAWTIITHVSMPLAIFYR 564
           ++K  R I  FL + N+++W            + ++   +G   W I+ +++MP +IFYR
Sbjct: 539 KRKVLRNIAAFLFLCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWIIVVNLAMPFSIFYR 598

Query: 565 FHSTVCLCEIW 575
            H+   L E++
Sbjct: 599 MHAAASLFEVY 609



 Score = 37.9 bits (84), Expect = 0.099
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 285 HIFECRRTN-IMGTLVQDASPFLFPCTIEYSLICAAILYVMWKNISK 330
           H  +C  T   + T +     +L+P  IEY ++ + +LYV+WKNI +
Sbjct: 248 HTPQCNCTPPTLCTAISHGIYYLYPFNIEYQILASTMLYVLWKNIGR 294


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,955,334
Number of Sequences: 224733
Number of extensions: 2824020
Number of successful extensions: 14311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14305
Number of HSP's gapped (non-prelim): 6
length of query: 586
length of database: 73,234,838
effective HSP length: 94
effective length of query: 492
effective length of database: 52,109,936
effective search space: 25638088512
effective search space used: 25638088512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 68 (31.5 bits)