GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001259-TA|BGIBMGA001259-PA|IPR004878|Protein of unknown
function DUF270
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    29   6.5  
At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme...    29   6.5  
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    29   6.5  

>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 178 PATRMAFIFIQMYFIFLNNEMKVYKHKIVARFGLMHMVGTNLSV-WLNVLVQETKHEILT 236
           P  R   + + +  +  +N  +V+  K + R G+       +S   LN  + E +   +T
Sbjct: 99  PVLRSLLLGLPLRKLVFSNGDEVHVMKALTRLGIEDCFERIISFETLNPDINEAELSCVT 158

Query: 237 FYDPENKTIGLSHRLAFQKAF 257
            + PEN  I     +AF+KAF
Sbjct: 159 GHLPENPVICKPTEIAFEKAF 179


>At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 348

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 183 AFIFIQMY-FIFLNNEMKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEIL 235
           A + +  Y F F  +E K  K K+  R GL+  +G    + +N L + T  EIL
Sbjct: 15  ALLMLTSYSFFFRLSEKKKRKEKLTMRNGLVDAIGNTPLIRINSLSEATGCEIL 68


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 183 AFIFIQMY-FIFLNNEMKVYKHKIVARFGLMHMVGTNLSVWLNVLVQETKHEIL 235
           A + +  Y F F  +E K  K K+  R GL+  +G    + +N L + T  EIL
Sbjct: 15  ALLMLTSYSFFFRLSEKKKRKEKLTMRNGLVDAIGNTPLIRINSLSEATGCEIL 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,567
Number of Sequences: 28952
Number of extensions: 428962
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 3
length of query: 586
length of database: 12,070,560
effective HSP length: 85
effective length of query: 501
effective length of database: 9,609,640
effective search space: 4814429640
effective search space used: 4814429640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)