GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001258-TA|BGIBMGA001258-PA|IPR001388|Synaptobrevin,
IPR010908|Longin, IPR011012|Longin-like
         (219 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   5.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   5.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   5.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.6  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu
          protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 45 YSHGNYLFHYIAENKLVYFC 64
          Y+H N ++H + E  +   C
Sbjct: 39 YTHNNEMYHRVKEEPIYESC 58


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
          transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 45 YSHGNYLFHYIAENKLVYFC 64
          Y+H N ++H + E  +   C
Sbjct: 39 YTHNNEMYHRVKEEPIYESC 58


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 45 YSHGNYLFHYIAENKLVYFC 64
          Y+H N ++H + E  +   C
Sbjct: 39 YTHNNEMYHSVKEEPIYESC 58


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 127 SRVHGELDELKNIMVKNIDNMAMRGEKLE 155
           +R++  L+ELK +++  +     R  KLE
Sbjct: 48  ARINNSLNELKTLILDAMKKDPARHSKLE 76


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
          transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 34 SKIPPHDDKLTYS 46
          SK+ P D+++TYS
Sbjct: 48 SKLVPPDERITYS 60


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
          transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 34 SKIPPHDDKLTYS 46
          SK+ P D+++TYS
Sbjct: 48 SKLVPPDERITYS 60


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,578
Number of Sequences: 317
Number of extensions: 1542
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 219
length of database: 114,650
effective HSP length: 54
effective length of query: 165
effective length of database: 97,532
effective search space: 16092780
effective search space used: 16092780
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)