Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001258-TA|BGIBMGA001258-PA|IPR001388|Synaptobrevin,
IPR010908|Longin, IPR011012|Longin-like
(219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 85 8e-18
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 58 1e-09
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 56 4e-09
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 28 0.93
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 27 2.9
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 6.6
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 6.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 6.6
SPAC167.04 |pam17||presequence translocase-associated motor subu... 25 8.7
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 85.0 bits (201), Expect = 8e-18
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 29 AEQILSKIPPHDDK-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXX 87
A+ IL ++ P +K + G+Y FHY+ +N + Y CI + + R AF +L E+
Sbjct: 29 AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88
Query: 88 XXXXXXXXX--XIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNID 145
PYA +F + + Y+ R DN+ +++ EL ++ +M KNI+
Sbjct: 89 NSFGEEALQPGLRPYAF-VQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIE 147
Query: 146 NMAMRGEKLELLVNKADNLATSSVSYRATSRTLQRSLFWKNIKMYVILVSIAALAVY 202
++ RG+ LE + + + +L SS Y+ +R + W+ I+ + + VY
Sbjct: 148 DLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEALWRQYGPVSIIALLFLIFVY 204
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 57.6 bits (133), Expect = 1e-09
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 49 NYLFH-YIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFG 107
NY+FH Y + L +D ++ A+ LN+I A+ F
Sbjct: 63 NYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWES--GAVTLSFP 120
Query: 108 RVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATS 167
L T + Y + + D I RV ELDE K+++ K I+++ RGEKL+ L+ ++DNL+T
Sbjct: 121 E-LDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQ 179
Query: 168 S 168
S
Sbjct: 180 S 180
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 129 VHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATSSVSYRATSRTLQRSLFWKNIK 188
+ ++D+ IM +NI ++ RGE+L+ L +K DNLA S+ +R + +++ ++WK+++
Sbjct: 35 IQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMR 94
Query: 189 MYV-ILVSIAALAVYLIGAMA 208
M + I++ I L V +I +A
Sbjct: 95 MRLCIIIGIIILLVVIIVPIA 115
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 28.3 bits (60), Expect = 0.93
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 73 SRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGE 132
S A F+N I+ P A+ E G V+ E H++ S + D E
Sbjct: 57 SHAKRFVNGIEEMSYVGEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPIN-EPE 115
Query: 133 LDELKNIMVKNIDNMAMRGEKLELLVNKADNLATSSVSYR 172
D + V + + G L+LL ++S+ YR
Sbjct: 116 KDLVVQYEVNPEEGLNCGGAYLKLLAEPTHGEMSNSIDYR 155
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 113 EMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATSSVS 170
+++H SE+ LD+ H + ELKNI+V+ R + K NL S V+
Sbjct: 1000 KLEHTSEAEALDS----HTAIYELKNILVQGYSQEEFRKSPPRGMQLKLGNLTNSHVT 1053
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 109 VLATEMKHYSESRD--LDNISRVHGELDELKNIMVKN 143
V + E+K + +++ LD I V G+L ++++ VKN
Sbjct: 914 VTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKN 950
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 115 KHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMR 150
KH S+S DLD+++ LKNI K A R
Sbjct: 293 KHRSKSNDLDSLAATEFGRKGLKNIKSKKRPGKARR 328
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 106 FGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLA 165
F V+ ++ + S L+N+ V+G ++ K ++ +NI N+ + ++ +N
Sbjct: 764 FLAVVPQVLRSHLLSHLLNNLFTVYGYVEPTKPLINENIANLFFQATQVIYSINSTS--L 821
Query: 166 TSSVSYRATSR 176
SS+ A+SR
Sbjct: 822 YSSIKKEASSR 832
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 193 LVSIAALAVYLIGAMACGGLAW 214
++ + +Y+IG +A GGL W
Sbjct: 92 IMGLDLFTLYVIGTIASGGLGW 113
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,697
Number of Sequences: 5004
Number of extensions: 30122
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 9
length of query: 219
length of database: 2,362,478
effective HSP length: 70
effective length of query: 149
effective length of database: 2,012,198
effective search space: 299817502
effective search space used: 299817502
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)
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