GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001258-TA|BGIBMGA001258-PA|IPR001388|Synaptobrevin,
IPR010908|Longin, IPR011012|Longin-like
         (219 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      83   1e-16
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                43   2e-04
SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)         29   2.3  
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_41666| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)          27   9.2  
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)                        27   9.2  

>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/81 (45%), Positives = 50/81 (61%)

Query: 1   MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 60
           MP+ +S++ARG  +L  YA   GNF +V   IL KIP +D K TY  G+Y FH I E+ L
Sbjct: 102 MPLYYSLIARGGTILVDYAETTGNFQQVTYTILEKIPGNDTKCTYVSGSYQFHVIVEDGL 161

Query: 61  VYFCITDDKFQRSRAFLFLNE 81
           VY C+ D +F +   + FL E
Sbjct: 162 VYLCMADKEFGKKDPYAFLEE 182



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 124 DNISRVHGELDELKNIMVKNI 144
           D I++V  E+DE+K++M KNI
Sbjct: 194 DAINKVQREVDEVKDVMTKNI 214


>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 29  AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXX 87
           A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I     
Sbjct: 34  AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFN 93

Query: 88  XXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDN 146
                       PY    EF   +    ++Y +SR   N++R++ EL +++ +MV+NID+
Sbjct: 94  REYGHQVSRATRPYPF-IEFDTYMQKAKRNYQDSRTRRNLNRLNDELVDVQRVMVQNIDD 152

Query: 147 MAMRGEKLEL 156
           +  RGE+L +
Sbjct: 153 VLQRGEQLSV 162


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 29 AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEI 82
          A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I
Sbjct: 34 AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDI 88


>SB_11543| Best HMM Match : Synaptobrevin (HMM E-Value=0.00034)
          Length = 629

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 124 DNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKA 161
           +NISRV  E+  + ++M  NI  +  RG KL+ L +K+
Sbjct: 550 NNISRVKNEIKGVVDVMQTNIAKVLDRGAKLDDLQDKS 587


>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 108 RVLATEMKHYSESRDLDNISRVHGELDELKNI 139
           RV    + +Y+E  D++N+ RV  EL  ++N+
Sbjct: 492 RVQTQYLMYYAEKGDVENVERVMRELKSMENV 523


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 36  IPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLN 80
           + P  +    S G   F Y   N  V FC+T  +F +S  +++ N
Sbjct: 521 VNPEVNVTRLSSGTGTFPYFLSNDRVQFCVTTQRFDQSYNWVWRN 565


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 102 MNSEFGRVLATEMKHYSESRDLD-NISRVH---GELDELKNIMVKNIDNMAMRGEKLELL 157
           M  E  ++     K  SE  D   NI ++    GE +EL N   K I+  +   ++LE +
Sbjct: 503 MEKEIEKLEEENKKLVSEINDFKVNIQKLESLKGEKEELDNAHSKIIEMYSDASDRLESV 562

Query: 158 VNKADNLATSSVSYRATSRTLQRS 181
             K  N      S     +TLQ S
Sbjct: 563 TQKHANATKQLQSLTEEKKTLQNS 586


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 113 EMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADN 163
           E K  +   +L  + +   E +E   +++K+I+NM    EK+ +  N   N
Sbjct: 226 ERKRKNRETELRQLRKTATEYEEQNGMLMKHIENMKQAIEKISIETNTQRN 276


>SB_41666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 166 TSSVSYRATSRTLQRSLFWKNIKMYVILVSIAALAVYLI 204
           T +V  +A S++   S +WK I   +++VSIA L VY +
Sbjct: 206 TPNVPKQAKSKS---SFWWKVIIFLILIVSIALLVVYFM 241


>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
          Length = 481

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 42  KLTYSHGNYLFHYIAENKLVYFCITDDKFQR 72
           + T +  NY+ HY   N L+ F ++++KF+R
Sbjct: 376 RCTLNSSNYV-HYRINNTLILFYVSENKFKR 405


>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
          Length = 479

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 143 NIDNMAMRGEKLELLVNKADNLATSSVSYRATSRTLQRSL 182
           N+  +++RG +LE  V +A + AT+S S    S+ L RSL
Sbjct: 235 NLRRLSVRGTRLESFVMQA-SAATTSTSLPPASKKLCRSL 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,093,403
Number of Sequences: 59808
Number of extensions: 198109
Number of successful extensions: 802
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 14
length of query: 219
length of database: 16,821,457
effective HSP length: 79
effective length of query: 140
effective length of database: 12,096,625
effective search space: 1693527500
effective search space used: 1693527500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)