GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001257-TA|BGIBMGA001257-PA|IPR013027|FAD-dependent
pyridine nucleotide-disulphide oxidoreductase
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)             223   3e-58
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)           40   0.003
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        32   1.1  
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     30   3.5  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  30   4.6  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         29   8.1  
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.1  

>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score =  223 bits (544), Expect = 3e-58
 Identities = 103/206 (50%), Positives = 144/206 (69%), Gaps = 1/206 (0%)

Query: 268 EYPLRVQLTNSQLVECDFLISATGVEPSVN-FTWDKVPEKGQDGGLAVNEFQETSIKNVF 326
           ++P+ V LTN+++  CDF++SATGV P+V  F      E G+DGG+ V++  +T+I +V+
Sbjct: 181 DWPVYVSLTNNRIYGCDFVVSATGVTPNVEPFLGCGGFELGEDGGIKVDKNMKTNIPDVY 240

Query: 327 AAGDVASAAWEHAPHWFQLRLWTQARQMAGMAAKAMHGRITNQEVLQDFCFELFTHCTKL 386
           AAGDV  A+WE +  WFQ+RLW+QARQM   AA+ M      +E   D+CFELF H T+ 
Sbjct: 241 AAGDVCCASWEPSKFWFQMRLWSQARQMGAFAARCMDLHNKGEETDLDYCFELFAHVTQF 300

Query: 387 FGYRVILLGKYNGQGLGTDYEILLRTTPNVEYIKFVLKEGKLQGAILIGETDLEEMCENL 446
           FGY+V+LLGKYN QGLG+DY++LLR T   EYIK V++ G++ GA+L+GETD+EE  ENL
Sbjct: 301 FGYKVVLLGKYNAQGLGSDYQLLLRCTKEKEYIKVVMQNGRMVGAVLVGETDMEETFENL 360

Query: 447 ILDQIDLSPFGXXXXXXXXXXXXYFD 472
           IL+++DLS FG            +FD
Sbjct: 361 ILNELDLSEFGESLLDPGVDIDDFFD 386



 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 148 VIVGNGGIASEIVHATSGIEKVWVIRDDYISATFIDPGAAEFF 190
           +IVGNGGIA E+ +   G E +W I+D+ I  TF D GAA FF
Sbjct: 1   MIVGNGGIALELAYELRGCEVIWAIKDNAIGNTFFDKGAASFF 43


>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
          Length = 440

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 85  LDTEKQKALTDKGVHIQYDVICICTGGIPR---LISDSKNS--KRVLGIRDTESVKDFQQ 139
           +D + +K   + G  + YD + + TGG P+   +   S N+  K+V   R  E  +   +
Sbjct: 211 VDPKDKKIQLEDGTLVSYDKLLLATGGAPKSLPIFEKSSNNIKKKVTLFRKVEDFQLLDK 270

Query: 140 KLKTGRRMVIVGNGGIASEIVHATSGIEKVWVI 172
             K  + +VI+G G + SE+  A    E V V+
Sbjct: 271 ITKGAKSIVIIGGGFLGSELACALGHKEGVKVV 303



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 174 DDYISATFIDPGAAEFFQETFKNENERKNQNTVLRRHIYSEEDSLVSLNKNLKSAALGPD 233
           D  + AT   P +   F+   K+ N  K + T+ R+    +   L  + K  KS  +   
Sbjct: 229 DKLLLATGGAPKSLPIFE---KSSNNIKKKVTLFRK--VEDFQLLDKITKGAKSIVIIGG 283

Query: 234 WYRKLENIKSDRGVQELEIVYKAEVESVLEDNKNEYPLRVQLTNSQLVECDFLISATGVE 293
            +   E   +    + +++V    VE+V    KN+  L + L+N + V  D +I A G++
Sbjct: 284 GFLGSELACALGHKEGVKVVPGVSVENV-SLKKNQ--LALGLSNGEKVNADHVIVAVGLK 340

Query: 294 PSVNFTWDKVPEKGQD-GGLAVNEFQETSIKNVFAAGDVA 332
           P+V        E     GG  VN   E    N++ AGD A
Sbjct: 341 PNVELADSAGLEVDPVLGGFHVNSELEAR-SNIWVAGDAA 379


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 193 TFKNENERK-NQNTV--LRRHIYSEEDSLVSLNKNLKSAALG-PDWYRKLENIKSDRGVQ 248
           T +N +ER  N+ ++  L   I  + D +  L + L+S   G  D  R+   ++      
Sbjct: 690 TLRNGHERMPNKQSINFLNSEITDKNDKIAYLERELESRGSGNEDASRQAAELRKRCSAL 749

Query: 249 ELEIVYKAEVESVLEDNKNEYPLRV 273
           E E+     V+  LED+  +YP RV
Sbjct: 750 EEEVEDLTAVKEKLEDDLADYPTRV 774


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 141 LKTGRRMVIVGNGGIASEIVHATSGIEKVWVIRDDYISATF 181
           L T  R V+  + G+AS++ H +SGI +V  +   Y+SA F
Sbjct: 522 LSTNCRSVLTADYGVASQLSHPSSGIHEVQTL-IRYMSAIF 561


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)

Query: 303 VPEKGQDGGLAVNEFQETSIKNVFAAGDVASAAWEHAPHWFQLRLWTQARQMAGMAAKAM 362
           V EK   G +A  + +ET  K   A+     AA   A HW++    T +    G  + A+
Sbjct: 758 VTEKSLSGKIADGKHRETKEKRPTASKSETKAATNGASHWWRGTAGTHSELEQGAISSAV 817

Query: 363 HGRITNQ 369
              I N+
Sbjct: 818 TPLIINE 824


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 201 KNQNTVLRRHIYSEEDSLVSLNKNLKSAALGPDWYRKLENIKSDRGVQELEIVYKAEVES 260
           + + T  R  I S  + L  +   +K      D  + LE+IK+      LE     E+ES
Sbjct: 768 EQRKTFTRASISSRSEKLFEILATIKPDLKVKDLSKALEDIKNIAAFNVLEHAKSGEIES 827

Query: 261 VLEDNKNEY 269
             E  +N Y
Sbjct: 828 DSESEENGY 836


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 242 KSDRGVQELEIVYKAEVESVLEDNKNEYPLRVQL-TNSQLVECDFLISATGVEPS 295
           K+D+ V+ + +  KA+ E+ L+D+++E PL+  + T   + +C   + A  V+PS
Sbjct: 25  KNDKNVELVMVNGKAK-EADLDDDESEQPLKTTVETRESVGKCTRFLFANTVKPS 78


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 287  ISATGVEPSVNFTWDKVPEKGQDGGL 312
            ++ T  + S+N TW  +PEK  +G L
Sbjct: 1500 VTLTANDTSINVTWQPIPEKNTNGDL 1525


>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 219 VSLNKNLKSAALGPDWYRKLENIKSDRGVQELEIVYKAEVESVLEDNKNE 268
           + L KN+    + PD  +KLE ++ +  ++E   VY++E E  L+    E
Sbjct: 348 IFLGKNIADY-IDPDIMKKLEELEKEEELREAAGVYESESEEELDSEGEE 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,461
Number of Sequences: 59808
Number of extensions: 577355
Number of successful extensions: 1281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 15
length of query: 472
length of database: 16,821,457
effective HSP length: 85
effective length of query: 387
effective length of database: 11,737,777
effective search space: 4542519699
effective search space used: 4542519699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)