GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001257-TA|BGIBMGA001257-PA|IPR013027|FAD-dependent
pyridine nucleotide-disulphide oxidoreductase
         (472 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.59 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.7  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   9.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 151 GNGGIASEIVHATSGIEKVWVIRDDYISATFIDPGAAEFFQETFKN 196
           GNGG+ S +V A   +  +  + DD   A  +   + E F     N
Sbjct: 185 GNGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSN 230


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 410  LRTTPNVEYIKFVLKEGKLQGAILIGETDLEEMCENLILDQIDLS 454
            ++  P++EY K  L  G  Q  + +   + EEM E  +LD+I L+
Sbjct: 991  IKRRPDLEYGKVWLFFGCRQRNLDLYRQEKEEMVELGVLDKIFLA 1035



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 161 HATSGIEKVWVIRDDYI 177
           H  +GI K W+  D Y+
Sbjct: 794 HTPNGIVKTWIAHDRYL 810


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 133 SVKDFQQKLKTGRRMVIVGNGGIASEIVH 161
           S+KDFQ  ++ G + + +   GI  +I++
Sbjct: 18  SIKDFQNAIRMG-QSICMAKTGINKQIIN 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 181 FIDPGAAEFFQETFKNENERKNQNTVLRRHIYSEEDSLVSLNKNLK 226
           FI   A   F+   KN+  R+ +  VL+     E+   +  N N K
Sbjct: 770 FISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMNNK 815


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 13 GGIAGVTCVETLAILHPEKTLVLVTASTLVKNVSNV 48
          GG  G      +A+L PEK + L        N+SN+
Sbjct: 2  GGDWGSVIASDMAVLFPEKIIGLHNNMCTSLNLSNL 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,768
Number of Sequences: 429
Number of extensions: 4778
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 472
length of database: 140,377
effective HSP length: 60
effective length of query: 412
effective length of database: 114,637
effective search space: 47230444
effective search space used: 47230444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)