GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001256-TA|BGIBMGA001256-PA|IPR002172|Low density
lipoprotein-receptor, class A, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR000033|Low-density lipoprotein receptor, YWTD
repeat, IPR006210|EGF, IPR013091|EGF calcium-binding,
IPR006209|EGF-like
         (1776 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    39   3e-04
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       31   0.053
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    28   0.66 
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    28   0.66 
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    28   0.66 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    26   2.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   3.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   4.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   6.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 26/195 (13%)

Query: 323 CDNERDCADGGDELNCKPN---SIRNCSLDEYTCAD---RRCVLKTWLCDGVRDCTNGED 376
           C+N+  C    ++  C      + + C ++  +C D   R+ V    LC+    C +  +
Sbjct: 108 CENQATCVQNKNQYQCLCGVGWTGKVCDVEMVSCKDAALRKVVPLKKLCNN-GTCEDIGN 166

Query: 377 EMNCEVSCEEDQYTCRPQEHLMSNAFRNCVNRKHVCDGMKD----CPRGDDEERCPLKRK 432
              C  S       C+ + +   +A   C N     D +      CP+G   + C L   
Sbjct: 167 SHRCHCSDGYSGSYCQTEINECDSA--PCQNGGTCLDLIGSYSCKCPKGFQGQNCELNVD 224

Query: 433 CSAEEKCEKLCITTYD--GHAACACPMGFLLAEDKYSCR-DIDECMYEQDPVCSQ--TCS 487
                 C+    T +D     +C+CP G L     Y C  ++D+C   +   C    TC 
Sbjct: 225 DCKPNPCQNGG-TCHDLVNSFSCSCPSGTL----GYICEINVDDC---RPGACHNNGTCL 276

Query: 488 NTVGSFRCGCMTGYI 502
           + VG F C C  G++
Sbjct: 277 DKVGGFECKCPPGFV 291



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 58/230 (25%), Positives = 75/230 (32%), Gaps = 27/230 (11%)

Query: 282 CDGDNDCGDWTDEDSCPMVPGSCNAGEFKCNDGKCIPERWRCDNERDCADGGDELNCK-P 340
           C     C D     SC   P        + N   C P    C N   C D  +  +C  P
Sbjct: 193 CQNGGTCLDLIGSYSCKC-PKGFQGQNCELNVDDCKPNP--CQNGGTCHDLVNSFSCSCP 249

Query: 341 NSIRN--CSLDEYTCADRRCVLKTWLCDGVRDCTNGEDEMNCEVS-----CEEDQYTCRP 393
           +      C ++   C    C       D V     G  E  C        CE D   C  
Sbjct: 250 SGTLGYICEINVDDCRPGACHNNGTCLDKV-----GGFECKCPPGFVGPRCEGDINECLS 304

Query: 394 QEHLMSNAFR-NCVNRKHVCDGMKDCPRGDDEERCPLKRKCSAEEKCEK--LCITTYDGH 450
                SNA   +CV    V D   +C  G     C  K    A   C+   +C T + GH
Sbjct: 305 NP--CSNAGTLDCVQL--VNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIHAGH 360

Query: 451 AACACPMGFLLAEDKYSCRDIDECMYEQDPVCSQTCSNTVGSFRCGCMTG 500
             C CP GF     ++S  D D    +   VC     +  G + C C +G
Sbjct: 361 K-CTCPEGFYGKNCEFSGYDCDSNPCQNGGVCR---ISDGGGYICDCPSG 406



 Score = 31.9 bits (69), Expect = 0.040
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 453 CACPMGFLLAEDKYSCRDIDECMYEQDPVCSQTCSNTVGSFRCGCMTGY 501
           C CP+GF       +C+  DE   E   +   TC + + S+ C C  G+
Sbjct: 9   CTCPLGF----SGINCQTNDEDCTETSCMNGGTCIDGINSYICTCKPGF 53



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 328 DCADGGDELNCKPNSIRNCSLDEYTCADRRCVLKTWLCDGVRDCTNGEDEMNCEV 382
           DC  G +  NC+ ++I  C  D   C     + +  L D    C       NCE+
Sbjct: 402 DCPSGTNGTNCEIDTINEC--DSNPCKHLDAICQDKLGDYACYCPPKHTGKNCEI 454



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 1629 NPCKESNGGCSHLCLFRGHEYICACPDDPDHVEC 1662
            NPC+  NGG   +    G  YIC CP   +   C
Sbjct: 383  NPCQ--NGGVCRIS--DGGGYICDCPSGTNGTNC 412



 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 1018 GCGKNNGGCSHLCLLKPGGRSCACP---IGIKLNKDGKTCADGP 1058
            G   NNG     CL K GG  C CP   +G +   D   C   P
Sbjct: 267  GACHNNG----TCLDKVGGFECKCPPGFVGPRCEGDINECLSNP 306



 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 1339 GYTCACPTGMPFEKSTTDQTPKKCKSHP 1366
            GY C CP+G        D T  +C S+P
Sbjct: 398  GYICDCPSGTNGTNCEID-TINECDSNP 424


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 31.5 bits (68), Expect = 0.053
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 21/109 (19%)

Query: 403 RNCVNRKHVCDGMKDCPRGDDEERCPLKRKCSAEEKCEKLCITTYDGHAA--------CA 454
           +NC   K +CD     P  D+ E C      S       +C     GH          C 
Sbjct: 1   KNCSESKAICDNP---PCDDEVESCIAVGVGSGRNSAPSIC--GEHGHCVNLPGVGHRCQ 55

Query: 455 CPMGFLLAEDKYSCRDIDECMYEQDPVCSQ--TCSNTVGSFRCGCMTGY 501
           C  GF     KY   +I++C  + +P C    TC + + +F+C C  G+
Sbjct: 56  CQPGFT---GKYCHENINDC--KVNP-CENGGTCVDKINAFQCICKEGW 98


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 521 FSNRIGIRQVWLTGDNYMSVVKGLHNAVA-LDYHYEKKLVFWSENNLRVI 569
           F ++IG  +V  TG N+ S+ +GL  ++A     YE  L+ ++++ L  I
Sbjct: 334 FIHQIGTLEVAFTGKNFFSITRGLILSIAGAIVSYELVLMQFNDSLLETI 383


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 521 FSNRIGIRQVWLTGDNYMSVVKGLHNAVA-LDYHYEKKLVFWSENNLRVI 569
           F ++IG  +V  TG N+ S+ +GL  ++A     YE  L+ ++++ L  I
Sbjct: 369 FIHQIGTLEVAFTGKNFFSITRGLILSIAGAIVSYELVLMQFNDSLLETI 418


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 521 FSNRIGIRQVWLTGDNYMSVVKGLHNAVA-LDYHYEKKLVFWSENNLRVI 569
           F ++IG  +V  TG N+ S+ +GL  ++A     YE  L+ ++++ L  I
Sbjct: 369 FIHQIGTLEVAFTGKNFFSITRGLILSIAGAIVSYELVLMQFNDSLLETI 418


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 7/30 (23%)

Query: 1172 VWTGLDSPRAIALHYEY-------GYMFWS 1194
            +W G D+P+++AL  +Y       G M WS
Sbjct: 321  LWVGFDNPKSVALKAQYAKDNNLAGVMIWS 350


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 50  PPYQPPPAGMGVGPNPMNS 68
           P  QPPPA MG+ P  ++S
Sbjct: 133 PLSQPPPAHMGIPPYQLDS 151



 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 38  DAPDPRSPLGRVPPYQPPPAGMGVGPNPMNSP 69
           +A D + P    P +QPP   +G  P+ +N+P
Sbjct: 729 EAFDVKLPPPPHPHHQPPRNPVGTNPHDINNP 760


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 50 PPYQPPPAGMGVGPNPMNS 68
          P  QPPPA MG+ P  ++S
Sbjct: 25 PLSQPPPAHMGIPPYQLDS 43



 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 38  DAPDPRSPLGRVPPYQPPPAGMGVGPNPMNSP 69
           +A D + P    P +QPP   +G  P+ +N+P
Sbjct: 621 EAFDVKLPPPPHPHHQPPRNPVGTNPHDINNP 652


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 protein.
          Length = 496

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 7/29 (24%)

Query: 1173 WTGLDSPRAIALHYEY-------GYMFWS 1194
            W G D+P++IA+  +Y       G M WS
Sbjct: 334  WVGYDNPKSIAIKVQYAKSLNLAGVMIWS 362


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 521 FSNRIGIRQVWLTGDNYMSVVKGL 544
           F  +IG   + +TG N+ S+ +GL
Sbjct: 367 FIQQIGNSDIAITGKNFFSITRGL 390


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,321
Number of Sequences: 317
Number of extensions: 22528
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 22
length of query: 1776
length of database: 114,650
effective HSP length: 67
effective length of query: 1709
effective length of database: 93,411
effective search space: 159639399
effective search space used: 159639399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)