GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001256-TA|BGIBMGA001256-PA|IPR002172|Low density
lipoprotein-receptor, class A, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR000033|Low-density lipoprotein receptor, YWTD
repeat, IPR006210|EGF, IPR013091|EGF calcium-binding,
IPR006209|EGF-like
         (1776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    31   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   2.5  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    30   3.4  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    29   5.9  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 658

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 1632 KESNGGCSHLCLFRGHEYICACPDDPDHVECSTVKMLRNYRDTELKDEEFSNST 1685
            + S G  SH    R + YI A P D D  + S+++ L+N     ++ E F +S+
Sbjct: 267  RRSLGANSHFIRLRSN-YISAKPLDTDRYDTSSIQSLKNAPRDSMESESFCSSS 319


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 37  VDAPDPRSPLGRVPPYQPPPAGMGVGPNPMNSP 69
           +  P P   +G  PP  PPP   G GP P   P
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 24   PIGQNGPRATNNSVDAPDPRSPLGRVPPYQPPPAGMGVGPNPMNSP 69
            P     P     SV AP   +P   +PP   P AG+   P P  +P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 287 DCGDWTDEDSCPMVPGSCNAGEFKC-NDG---KCIPERWRCDNERDCADGGDELNCK-PN 341
           DC D +DE        +C+ G+F C N G     IP     D   DC DG DE   K PN
Sbjct: 66  DCPDGSDEPGT----SACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCPN 121

Query: 342 S 342
           +
Sbjct: 122 T 122


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 467 SCRDIDECMYEQDPVCSQTCSNTVGSFRCGCMTGYIL-RPDERSCKPTGESP--TLLFSN 523
           SC  +   + E +P      S+ V  + C  +   +  RPDE  C P G S   T  FS 
Sbjct: 247 SCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDEGQCNPWGNSASGTREFSK 306

Query: 524 RIGIRQVWLT 533
            IG    + T
Sbjct: 307 VIGAAFTFFT 316


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,918,290
Number of Sequences: 5004
Number of extensions: 409630
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 11
length of query: 1776
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1693
effective length of database: 1,947,146
effective search space: 3296518178
effective search space used: 3296518178
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)