GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001256-TA|BGIBMGA001256-PA|IPR002172|Low density
lipoprotein-receptor, class A, IPR000152|Aspartic acid and asparagine
hydroxylation site, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR000033|Low-density lipoprotein receptor, YWTD
repeat, IPR006210|EGF, IPR013091|EGF calcium-binding,
IPR006209|EGF-like
         (1776 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    41   1e-04
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    41   1e-04
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   9.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   9.6  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
            protein.
          Length = 157

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 1019 CGKNNGGCSHLCLLKPGGRS------CACPIGIKLNKDGKTCAD 1056
            C   NG CSHLCL  P   S      CACP G+KL  DG  C +
Sbjct: 36   CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVE 79



 Score = 34.7 bits (76), Expect = 0.007
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 8/36 (22%)

Query: 1320 NACGTDNGGCSHLCL-------RSPLGYTCACPTGM 1348
            N C   NG CSHLCL       +SPL  +CACP G+
Sbjct: 34   NQCQAVNGHCSHLCLPAPRINSKSPL-LSCACPDGL 68



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 1600 TGKNITLIRT--NLEMAMEIKAVSADRQ-HGWNPCKESNGGCSHLCL------FRGHEYI 1650
            TG+++  + +   L+  M +      RQ  G N C+  NG CSHLCL       +     
Sbjct: 2    TGQSVEAVMSLRALKYPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLS 61

Query: 1651 CACPD 1655
            CACPD
Sbjct: 62   CACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
            protein.
          Length = 128

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 1019 CGKNNGGCSHLCLLKPGGRS------CACPIGIKLNKDGKTCAD 1056
            C   NG CSHLCL  P   S      CACP G+KL  DG  C +
Sbjct: 36   CQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVE 79



 Score = 34.7 bits (76), Expect = 0.007
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 8/36 (22%)

Query: 1320 NACGTDNGGCSHLCL-------RSPLGYTCACPTGM 1348
            N C   NG CSHLCL       +SPL  +CACP G+
Sbjct: 34   NQCQAVNGHCSHLCLPAPRINSKSPL-LSCACPDGL 68



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 1600 TGKNITLIRT--NLEMAMEIKAVSADRQ-HGWNPCKESNGGCSHLCL------FRGHEYI 1650
            TG+++  + +   L+  M +      RQ  G N C+  NG CSHLCL       +     
Sbjct: 2    TGQSVEAVMSLRALKYPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRINSKSPLLS 61

Query: 1651 CACPD 1655
            CACPD
Sbjct: 62   CACPD 66


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
            receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 30   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 63


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 954 YWTDGGNKTIEYANLDGTGRTKLIENLPHPFGLDLYG 990
           +WT     T   A+    G+ K +  +P PF L ++G
Sbjct: 31  FWT----ATSHEASAPAEGKFKTVSKVPGPFSLPIFG 63


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
            receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 98   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 131


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
            receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 1439 SQKLETPNGLGVDWIANNIYWTDNEHKVIEVARL 1472
            +Q L T   L ++W+  N+ W ++E+  ++  R+
Sbjct: 98   NQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRI 131


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,875
Number of Sequences: 429
Number of extensions: 28391
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 17
length of query: 1776
length of database: 140,377
effective HSP length: 68
effective length of query: 1708
effective length of database: 111,205
effective search space: 189938140
effective search space used: 189938140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)