GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001255-TA|BGIBMGA001255-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    30   6.1  
01_06_1183 - 35176780-35177266,35179631-35181093                       30   6.1  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    29   8.1  

>03_02_0349 -
           7722461-7723069,7723494-7724221,7724281-7724641,
           7724751-7725072,7725183-7725661,7726157-7726430,
           7726598-7726884,7726966-7727388,7727545-7727890,
           7728011-7728328,7729817-7731081
          Length = 1803

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 374 ANRDKQRVQNMRNQADWLLHNIIPRHVADQLKNTAKYSENHKDVAIIFASIINFNEMYDE 433
           A+ +++R   M  Q    L N  PR   + L N  K  E+ +++A    S    N+    
Sbjct: 630 ASLEQRRAYKMELQEGISLFNRKPRKGIEFLINANKVGESPEEIAAFLKSSSGLNKTMIG 689

Query: 434 SYLKGKE--YLRILNELIADFD 453
            YL  +E   L++++  +  FD
Sbjct: 690 DYLGEREDLSLKVMHSYVDSFD 711


>01_06_1183 - 35176780-35177266,35179631-35181093
          Length = 649

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 86  NRFTLCFESDEMERHYRDKAHRSDDCEDLPPTLTTSRFNTALDILVSA 133
           +R  L  ESDEME   R+  H      DL P +     +  LD+L  A
Sbjct: 110 SRMRLLLESDEMEAELRELNHDLATLLDLLPVVELGLADDVLDVLALA 157


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 210 LSGGLMISLPILIVLINFSCENTTLPI 236
           L+  L++ LP+L +L N  C N  LPI
Sbjct: 613 LASSLLVPLPVLTLLFNEYCRNRFLPI 639


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,201
Number of Sequences: 37544
Number of extensions: 681164
Number of successful extensions: 1997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 3
length of query: 607
length of database: 14,793,348
effective HSP length: 86
effective length of query: 521
effective length of database: 11,564,564
effective search space: 6025137844
effective search space used: 6025137844
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 63 (29.5 bits)