GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001255-TA|BGIBMGA001255-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57570.1 68416.m06410 expressed protein                             32   0.96 
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    31   1.7  
At4g31080.1 68417.m04412 expressed protein                             31   2.9  
At1g17120.1 68414.m02086 amino acid permease family protein low ...    30   5.1  
At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...    29   6.8  
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ...    29   6.8  
At5g35810.1 68418.m04303 hypothetical protein                          29   8.9  

>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 441 YLRILNELIADFDELLERPQFQHVEKIKTIGSTFMAASGLNP--DLRHASRGTYDHLYQL 498
           +L  ++E +AD  +L+      H++K   + ++F++ S      D   + +  +DHL  L
Sbjct: 634 FLSCISESLADTSDLVLPHVLSHMKKQNKVDASFISRSDTKSSVDKTKSEKSLFDHLCPL 693

Query: 499 MDFALEMQKVVDNFN 513
           +   L  Q+V D+ +
Sbjct: 694 LILRLLPQRVFDDID 708


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 97  MERHYRDKAHRSDDCEDLPPTLTTSRFNTALDILVSALIFLAVSASAFVTCSDWWRIVGW 156
           +E +  DK      C D P  L  SR +   D+  S L+  AV  S    C +WW    W
Sbjct: 229 LENNNNDKTTSKSLCLDTPLMLYGSRDSGENDVW-STLVKFAV-PSCIAVCLEWW----W 282

Query: 157 FAFFAVI 163
           + F  V+
Sbjct: 283 YEFMTVL 289


>At4g31080.1 68417.m04412 expressed protein 
          Length = 202

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 418 AIIFASIINFNEMYDESYLKGKEYLRILNELIADFDELLERPQFQHVEKI 467
           A+ ++SI++F++M+D    K  E LR   E +A  +EL ER  +   +++
Sbjct: 133 ALAYSSIVSFSKMFDRRDQKTLEKLRA--ERLAKINELKERTNYYTTQQL 180


>At1g17120.1 68414.m02086 amino acid permease family protein low
           similarity to SP|O43246 Cationic amino acid
           transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 590

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 114 LPPTLTTSRFNTALDILVSALIFLAVSASAFVTCSDWWRIVGWFAFFAVIELVAIALCFY 173
           +PP        T   I  + L+ +  S  +F T  +    V  FA   +  LVA+AL   
Sbjct: 394 IPPWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSVFSFATLFIFMLVAVALLVR 453

Query: 174 RHYLK 178
           R+Y+K
Sbjct: 454 RYYVK 458


>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 437 KGKEYLRILNELIADFDELLERPQFQHVEKIKTIGSTFMAASGLN 481
           +GKE+L I+ +  +D  +LLE PQ   V  ++   +T  AA  LN
Sbjct: 111 RGKEFLSIIQKAESDLRQLLEIPQEYSVLFLQGGATTQFAALPLN 155


>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 574

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 26  YTSSQSSLNDLHSKSRLPPPLNDQQVQSLQKLRKQSDLQLIRCVQD 71
           Y   QS    LH  +RLPP +N QQV S   L  Q +L   + V++
Sbjct: 321 YKEKQSKDTLLHLVARLPP-MNRQQVGSGAALHMQKELLWFKAVKE 365


>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 26  YTSSQSSLNDLHSKSRLPPPLNDQQVQSLQKLRKQSDLQLIRCVQD 71
           Y   +S+ N LH  +RLPPP N  QV S   L+ Q ++   + V++
Sbjct: 97  YKEKESNDNLLHLVARLPPP-NRLQVVSGAALQMQREILWYKAVKE 141


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,069
Number of Sequences: 28952
Number of extensions: 581890
Number of successful extensions: 1863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 7
length of query: 607
length of database: 12,070,560
effective HSP length: 85
effective length of query: 522
effective length of database: 9,609,640
effective search space: 5016232080
effective search space used: 5016232080
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 62 (29.1 bits)