GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001254-TA|BGIBMGA001254-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    37   0.011
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             32   0.31 
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    32   0.31 
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    31   0.55 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    31   0.55 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    29   2.2  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    29   2.9  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    28   5.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   5.1  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    28   5.1  
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   5.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   6.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   6.7  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    27   8.9  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 503 NYFTAPLTPKTEDKLNLRKPNSNNFLSPTPFNFRAKASSLPSILDSDTELDDNRDKGLTE 562
           ++FT+ +TPKT  +  LRK  S+N+ + T  N +++ ++L S +  D+ L+ +  K L  
Sbjct: 204 SFFTSCVTPKTILESPLRKQGSHNWKTST--NSQSRLAALFSSIFEDSCLEVDSVKRLLS 261

Query: 563 RTDSSSKSP 571
            + SSS SP
Sbjct: 262 GSPSSSSSP 270


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 551 ELDDNRDKGLTERTDSSSKSPTSVGSYGKYTNKLKNWKVPRFLRKHSDTPLHGIKKEDA 609
           E+  +++K + E+   S+K P  + S+ K ++  K+ +V   L K S  P   +K+E+A
Sbjct: 76  EIGRSKEKFVDEKPFYSNKEPLKINSWKKSSSHPKSKEVSNGLLKVSTPPTEFVKRENA 134


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 302 SVMPPKLASNLMNEQVTEADTNVKTYH---NPLNSRISNPGSDIKSLFRPFNMSCMDNVS 358
           S +PP   S +MN  ++   TN+       NPLN    +  +DI + F      CM+  S
Sbjct: 63  SPLPPFSPSKIMNRSISVPPTNISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMNEAS 122


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 518 NLRKPN---SNNFLSPT------PFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSSS 568
           N  KPN   S N +S T      P   +  +++LP    ++   ++N D    E+ DS+S
Sbjct: 186 NTSKPNPIVSENPISATSVSIEIPIKPKELSNNLPFPRLNNNNTNNNNDNNAIEKRDSAS 245

Query: 569 KSPTSVGSYGKYTNKLKNWKVPRFLRKHSDTPLHGIKKEDASDKTIHLLER 619
            +P+SV S  + +     W     L ++ D  +   +K + SD+ I ++ER
Sbjct: 246 PTPSSVSS--QISIDFSTWPHQNLL-QYLD--ILRDEKSEISDRIIEVMER 291


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 581  TNKLKNWKVPRFLRKHSDTPLHGIKKEDASDKTIHLLERGDVSVCVQSSNGYQQV 635
            +N LK+  V  F+RKH     +G++K++     + L  R D       S  Y+Q+
Sbjct: 1864 SNTLKSLSVDHFIRKHERKYFNGLRKQEID---VKLKSRSDKEKSCTVSESYKQI 1915


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 506 TAPLTPKTEDKLNLRKPNSNNFLSPTPFNFRAKASSLPSIL 546
           + P++  ++ ++NL +  SN   +P PF+  AK S LPS L
Sbjct: 405 STPISAASKVRMNLMQ--SNQTPTPAPFSIAAKKSHLPSKL 443


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 313 MNEQVTEADTNVKTYHNPLNSRISNPGSDIKSLFRP 348
           +  +++E D+++   H+PL+  + NP ++  ++F P
Sbjct: 54  IRSELSEQDSSISFTHDPLHIPLPNPSNNNDNIFHP 89


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 287 RQLEMEKQLKEKMIHSVMPPKLASNLMNEQVTEADTNVKTYHNPLN-------SRISNPG 339
           R+L +  QL +  I +     L  NL+N  ++   T ++ Y  PL         R++N  
Sbjct: 38  RELALHTQLSKHTIPTTKDVALWLNLLNIPMSSLQTELEKYLKPLPPAINDELDRLANES 97

Query: 340 SDIKSLFR 347
            DI S F+
Sbjct: 98  QDIPSKFK 105


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 514 EDKLNLRKPNSNNFLSPTPFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSSSKSPTS 573
           +D L+    + NN + P+  N       L    + + E  D R +G TE+ +++    T 
Sbjct: 306 DDSLSSNLTDLNNLVLPS--NVVNNKKELTEFANEEAEASDKRKEGFTEKEETADAVVTL 363

Query: 574 VGSY 577
           V S+
Sbjct: 364 VPSH 367


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 73  RFDSEILEGQYRSSSFRQIRLRFRFALLYILIFSISWFVYFVVLGLNDVTVKWPF---LC 129
           +F+SEI+ G    +  +++  R    L   ++F + W    +   +    +K  F     
Sbjct: 423 KFESEIMSGIRSITPEKRLMRRVNGLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYS 482

Query: 130 SLFAGVLLITCIMLL--VTFTNFYKV 153
           S+  G +L TCI+ +  +TFT + K+
Sbjct: 483 SVKLGFMLGTCIVSVSFLTFTVYAKL 508


>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 640 ESQDNKRPLQSSSKL-NIPQINETSSFDREIIDIRSYLSQSRSNMSPF 686
           E  D K+ +  S KL    ++ ET++ D +I     Y S+S +N+S +
Sbjct: 120 EEGDKKQIITDSGKLPETEELTETTNEDLDIKQFSPYSSESSANVSSY 167


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 581 TNKLKNWKVPRFLRKHSDTPLHG--IKKEDASDKTIHLLERGDVSVCVQ 627
           TN  +NW+   F+R+  D+  HG  I K +  ++ I LL    +  C++
Sbjct: 59  TNPDRNWEAIAFIREFFDSAKHGYVIPKHEIRNR-IRLLSEASLISCLR 106


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 524 SNNFLSPTPFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSSSKSPTSVGS 576
           S + +  T  +  + +SSL S   S T    +    +   + SSS SPTS  S
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSS 288


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 304 MPPKLASNLMNEQVTEADTNVKTYHNPLNSRISNP 338
           +P   A  +M+   + ADTN     +PL +RI NP
Sbjct: 12  LPSYPAGGIMSVSNSNADTNQGVTQHPLANRIVNP 46


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,901
Number of Sequences: 5004
Number of extensions: 123766
Number of successful extensions: 386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 17
length of query: 705
length of database: 2,362,478
effective HSP length: 78
effective length of query: 627
effective length of database: 1,972,166
effective search space: 1236548082
effective search space used: 1236548082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)