GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001254-TA|BGIBMGA001254-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    33   1.0  
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    30   7.3  
08_02_1156 - 24760332-24761530,24762757-24763648                       29   9.6  

>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 534 NFRAKASSLPSILDSDTELD-DNRDKGLTE---RTDSSSKSPTSVGSYGKYTNK--LKNW 587
           + R++ S+L S   + + L  D+ D+  T+   RT S+   P  V +Y KY+    +  W
Sbjct: 257 DIRSRCSNLCSTSSTGSHLSLDSLDRNATKSSSRTHSTLTDPNFVENYFKYSRLHFIGTW 316

Query: 588 KV---PRFLRKHSDTPLHGIKKEDASDKTI-HL-LERGDVSVCVQSSNGYQQVPIVIESQ 642
           +     RF     D    G +     + TI H+ ++   VSV +++       P+ +   
Sbjct: 317 RNRYRKRFSNLLGDKSSKGNRDHSGKNNTIIHIDMDCFFVSVVIRNKPELHDKPVAVCHS 376

Query: 643 DNKRPLQSSSKLNIPQIN 660
           DN +     S  N P  N
Sbjct: 377 DNPKGTAEISSANYPARN 394


>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 223 IYSIVFEVLNIVLHLSEQEWQASGMFVRILLQLCVH 258
           IY+I  E  N++L++S  +W+A+   V + L  C+H
Sbjct: 31  IYTINREQKNVILNVSMSQWEAA-FVVTLSLLFCIH 65


>08_02_1156 - 24760332-24761530,24762757-24763648
          Length = 696

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 245 SGMFVRILLQLCVHIIGVHIYLMTFVRMRGTFMKVGQSLLVRRQLEMEKQLKEKMIHSVM 304
           SG  V +LL LC  +    I L    + +  F K    LL+++ +  +  + E+MI ++ 
Sbjct: 306 SGGTVLLLLALCAPLATRKIKLRKMKKTKERFFKQNHGLLLQQLISQKVDIGERMIITLS 365

Query: 305 PPKLASN 311
             + A+N
Sbjct: 366 DLEKATN 372


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,747
Number of Sequences: 37544
Number of extensions: 706136
Number of successful extensions: 1552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1550
Number of HSP's gapped (non-prelim): 4
length of query: 705
length of database: 14,793,348
effective HSP length: 87
effective length of query: 618
effective length of database: 11,527,020
effective search space: 7123698360
effective search space used: 7123698360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)