GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001254-TA|BGIBMGA001254-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18890.1 68416.m02399 expressed protein similar to UV-B and o...    33   0.86 
At2g44940.1 68415.m05594 AP2 domain-containing transcription fac...    30   4.6  
At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi...    30   6.0  
At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348, gb|N6...    30   6.0  
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d...    29   8.0  
At1g08500.1 68414.m00941 plastocyanin-like domain-containing pro...    29   8.0  
At1g02540.1 68414.m00205 hypothetical protein                          29   8.0  

>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 641

 Score = 32.7 bits (71), Expect = 0.86
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 508 PLTPKTEDKLNLRKPNSNNFLSPTPFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSS 567
           PL+P    + NL+ P+S    SPT  + R   S  P   DSDT+      K +TE   ++
Sbjct: 444 PLSPYARYE-NLKPPSSP---SPTASSTRKSDSLSPGPTDSDTDKSSTVAKTVTETAVAT 499

Query: 568 SKSPTSVGS 576
           S + TSV +
Sbjct: 500 SVTETSVAT 508


>At2g44940.1 68415.m05594 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403) [Arabidopsis thaliana]; contains pFAM
           domain (PF00847)
          Length = 295

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 524 SNNFLSPTPFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSSSKSPTSVG----SYGK 579
           ++NF+       +A   SL S++  + + D N   G   +T+   K PT  G    S+GK
Sbjct: 51  NSNFIEEDNSKRKASRRSLSSLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRGVRMRSWGK 110

Query: 580 YTNKLK 585
           + ++++
Sbjct: 111 WVSEIR 116


>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 349 FNMSCMDNVSILFADIVGFTRMSSMIEAIQEFDRERGEGINMRVGVHTGTVLCGIVGTRR 408
           FN     +VS+    I G+TR + +++A+  FD      +     + +G V CG + T  
Sbjct: 58  FNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAV 117

Query: 409 FKFD 412
             FD
Sbjct: 118 KLFD 121


>At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348,
           gb|N65615 and gb|Z18119 come from this gene
          Length = 273

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 308 LASNLMNEQVTEADTNVKTYHNPLNSRISNPGSDIKSLFRPFNMSCMDNVSIL---FADI 364
           L SNL +  +    T       P+ S+  +  S +   F   N+S +  +SI      D 
Sbjct: 4   LLSNLSSPSI-HLQTGKYPNLKPIFSQSLSSSSSVSYEFVEENLSTLSLLSIQSPPLKDT 62

Query: 365 VGFTRMSSMIEAIQEFDRERGEGINMRVGVHTGTVLCGIVGTRRFKFDVWSNDVTFANKM 424
              TR SS  +     DR+    IN+ V V T      ++ TR   +D++ +D+TF + M
Sbjct: 63  QVQTRHSSQ-DKHNNHDRDEFY-INLGVAVRTLREDLPLLFTRDLNYDIYRDDITFVDPM 120

Query: 425 ES 426
            +
Sbjct: 121 NT 122


>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
           cyclin-dependent kinase inhibitor 7 (ICK7) identical to
           cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
           thaliana] GI:14422297
          Length = 195

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 534 NFRAKASSLPSILDSDTELD----DNRDKGLTERTDSSSKSPTSVGSYGKYTNKLKNWKV 589
           NFR +  S    L    E+D    + RD+  TE+     KSPT       + +  + ++ 
Sbjct: 109 NFRKQGISSSENLGETAEMDSATTEMRDQRKTEKKKKMEKSPTQ-AELDDFFSAAERYEQ 167

Query: 590 PRFLRKH-----SDTPLHG 603
            RF  K+     +DTPL G
Sbjct: 168 KRFTEKYNYDIVNDTPLEG 186


>At1g08500.1 68414.m00941 plastocyanin-like domain-containing
           protein
          Length = 228

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 129 CSLFAGVLLITCIMLLVTFTNFYKVYT 155
           CS    VLLI C+MLL    + YK YT
Sbjct: 5   CSSCVNVLLIMCLMLLSLSADAYKNYT 31


>At1g02540.1 68414.m00205 hypothetical protein
          Length = 290

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 529 SPTPFNFRAKASSLPSILDSDTELDDNRDKGLTERTDSSSKSP 571
           S T  N    A+ L +ILD + E DD+ D+G+ ++ DS    P
Sbjct: 148 STTDQNMEEYANELENILDEEEEEDDDDDRGI-QQQDSQIPLP 189


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,407
Number of Sequences: 28952
Number of extensions: 618115
Number of successful extensions: 1652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 9
length of query: 705
length of database: 12,070,560
effective HSP length: 86
effective length of query: 619
effective length of database: 9,580,688
effective search space: 5930445872
effective search space used: 5930445872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)