Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
(127 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical pr... 29 0.77
U23515-1|AAK21454.2| 511|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr... 27 3.1
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 27 3.1
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 27 4.1
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 27 4.1
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 27 5.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 26 7.2
U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical pr... 26 7.2
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 26 7.2
AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical... 26 7.2
Z71186-7|CAM35835.1| 552|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 26 9.5
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 26 9.5
>U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical
protein B0507.8 protein.
Length = 350
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
++T K + +N+ D +I + + + D++DN + +E L ++KT +L DK
Sbjct: 61 DATSKFNEKNLHLDKEIAEGKARSMIMESEVGRQIFDEVDNKKDMEELLAQKKTEVLMDK 120
Query: 68 MTQ 70
+
Sbjct: 121 RNE 123
>U23515-1|AAK21454.2| 511|Caenorhabditis elegans Hypothetical
protein R144.5 protein.
Length = 511
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 25 PISASSEAGIHKKPTLLSSDKMDNDANAQEKLTE 58
PI+ +S A P S K DND N +E L E
Sbjct: 282 PIATTSPAATTTLPWNTDSGKSDNDKNGEETLKE 315
>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 9 STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
ST + E+V+ D + P S ++ I ++ + ND+ Q+ + I PDK
Sbjct: 119 STSLIKEESVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYLQDSFSIEYRQINPDK 177
>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 9 STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
ST + E+V+ D + P S ++ I ++ + ND+ Q+ + I PDK
Sbjct: 119 STSLIKEESVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYLQDSFSIEYRQINPDK 177
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 38 PTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKTV 74
PT+ + MD+DANA ++ E+K + D + + +T+
Sbjct: 67 PTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTM 103
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 21 DSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMIL 64
+ +IP S S+E G+ K L ++D D NA +K + IL
Sbjct: 522 EERIPDSNSAELGLPKAAVLEQLLELDLDVNATDKNNDTPMHIL 565
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 21 DSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMIL 64
+ +IP S S+E G+ K L ++D D NA +K + IL
Sbjct: 522 EERIPDSNSAELGLPKAAVLEQLLELDLDVNATDKNNDTPMHIL 565
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 26.6 bits (56), Expect = 5.4
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 7 LNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPD 66
L+ ++ SEN +S + A +H K T + + D A A+ KL E + M++ D
Sbjct: 558 LDDKKRCLSENEDIESNLKRLAIDTLELHDKMTEMEEEFWDFSATAKRKLFESE-MVVCD 616
Query: 67 KMTQSK 72
+ S+
Sbjct: 617 LLNNSQ 622
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 12 KLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDAN 51
K+SSEN+I IPISA +E + +S + D N
Sbjct: 5733 KISSENLILYDMIPISAKTEYSLDHTSEAISK-YLQTDTN 5771
>U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical
protein C18F10.2 protein.
Length = 711
Score = 26.2 bits (55), Expect = 7.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 14 SSENVISDSKIPISASSEAGIHK------KPTLLSSDKMDNDANAQEKLTERKT 61
S ++ IS S P S + EA I K PTLL +D ND++ + L K+
Sbjct: 649 SFKSKISSSDTPKSPALEAAIQKISEASTLPTLLQNDLNSNDSSISDALNILKS 702
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 6 VLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSD 44
+LN+T S + S +K+ I A + G H+ L+ SD
Sbjct: 1744 ILNTTTVTGSHSTRSTAKLDIRAPATKGNHELAVLILSD 1782
>AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical
protein Y47G6A.27 protein.
Length = 421
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 24 IPISASSEAGIHKKPTLLSSDKMDNDANAQEKL 56
+P+ S HK P +L +K D AN +K+
Sbjct: 87 LPLIRQSFGEYHKTPVILVGNKSDGTANNTDKI 119
>Z71186-7|CAM35835.1| 552|Caenorhabditis elegans Hypothetical
protein F23D12.10 protein.
Length = 552
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 VLNSTEKLSSENVISDSKIPISASS 30
V+ ST+ L I D K+PI+A++
Sbjct: 364 VIGSTQNLHENKAIKDVKVPINANN 388
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 19 ISDSKIPISASSEAGIH-KKPTLLSSDKMDNDANAQEKLTER 59
+ ++ P S S E + + P +S+ D+DA + E LTER
Sbjct: 22 VEHNQQPFSPSDEPRVRFEAPAPVSARSDDSDAESVESLTER 63
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 25.8 bits (54), Expect = 9.5
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 5 TVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEK--LTERKTM 62
++LN TE E P + I KK ++ S+K + N + K L +K +
Sbjct: 555 SILNQTEPTKIEGPDKQETRPTTVIRRTVIRKKEEMVPSEKPEVSENEKPKRRLVRKKKV 614
Query: 63 ILPDKMTQSKTVTKH 77
+ D M + H
Sbjct: 615 VEGDGMNGTNGHQSH 629
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.311 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,999
Number of Sequences: 27539
Number of extensions: 78424
Number of successful extensions: 286
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 15
length of query: 127
length of database: 12,573,161
effective HSP length: 73
effective length of query: 54
effective length of database: 10,562,814
effective search space: 570391956
effective search space used: 570391956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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