Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
(127 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain... 29 0.96
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 2.2
At2g22520.1 68415.m02671 hypothetical protein and grail 28 2.2
At3g52500.1 68416.m05773 aspartyl protease family protein contai... 27 2.9
At3g50376.1 68416.m05510 hypothetical protein 27 2.9
At2g24310.1 68415.m02906 expressed protein 27 5.1
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 27 5.1
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.8
At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH) domain... 26 6.8
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 26 6.8
At5g36780.1 68418.m04406 hypothetical protein 26 8.9
At5g36690.1 68418.m04391 hypothetical protein 26 8.9
At1g75400.1 68414.m08759 expressed protein 26 8.9
>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein similar to SP|Q99614
Tetratricopeptide repeat protein 1 {Homo sapiens};
contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
Domain
Length = 811
Score = 29.1 bits (62), Expect = 0.96
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 16 ENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKT 73
E + S + + EA KP SDK D D K E+KT DK + K+
Sbjct: 219 EELKSPKVVVVDKGDEAEGRNKPKEEKSDKSDIDGKIGGKREEKKTSFKSDKGQKKKS 276
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 14 SSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKT 73
++E V+++ +I +SSE G + + L MD+ A E + E K +L + ++ + T
Sbjct: 421 NAELVVAEDRI--DSSSETGKSSRDSRLRDKDMDDSALGTEGMVEVKEEMLSEDISNA-T 477
Query: 74 VTKH 77
+++H
Sbjct: 478 LSRH 481
>At2g22520.1 68415.m02671 hypothetical protein and grail
Length = 185
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 5 TVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMIL 64
T+L ++ S+ + ++ + S S++ + TLL S K +Q K ++T++
Sbjct: 74 TLLKPSKPSQSKADVQETLLKPSKPSQSKADVQETLLKSSKP-----SQSKADVQETLLK 128
Query: 65 PDKMTQSK 72
P K++QSK
Sbjct: 129 PSKLSQSK 136
>At3g52500.1 68416.m05773 aspartyl protease family protein
contains Pfam PF00026: eukaryotic aspartyl protease
Length = 469
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 17 NVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKTVT 75
+V+S K+P+S S + K LS ++ + A+ + T I PD+ S T T
Sbjct: 14 SVVSAVKLPLSPFSHSDQSPKDPYLSLRRLAESSIARAHKLKHGTSIKPDEDALSSTTT 72
>At3g50376.1 68416.m05510 hypothetical protein
Length = 130
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 5 TVLNSTEKLSSENVISD--SKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTM 62
T S K + E V++D S + + +S+ H K LL K +D + E+KT
Sbjct: 27 TSKESPSKKTLELVVADKQSVVIVDDTSDVWPHDKSNLLQITKDGDDNTKSKSYAEKKTD 86
Query: 63 ILPD 66
PD
Sbjct: 87 ECPD 90
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MANTTVLNSTEKLSSENV-ISDSKIPISASS 30
MA TT+++S+ L +ENV +S+S + S+S+
Sbjct: 115 MAETTLVSSSPSLPAENVRVSESNLKSSSST 145
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 10 TEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMI 63
TEKL+SEN + K+ ++ +E+ +++K + ++ +A K + ++ +
Sbjct: 176 TEKLTSENKELNEKLEVAGETESDLNQKLEDVKKERDGLEAELASKAKDHESTL 229
>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 18 VISDSKIPISASSEAGIHKKPTLLSSDKMDNDA 50
VI + +P S A +H+KPT L D DA
Sbjct: 85 VIMRAAVPALRSKIAAMHQKPTALIVDLFGTDA 117
>At5g35200.1 68418.m04171 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein short form, Rattus
norvegicus, EMBL:AF041373;similar to Chain A, Calm-N
N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid
Leukaemia Protein, Pi(4,5)p2 Complex (GP:13399999) {Homo
sapiens}
Length = 544
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 25 PISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMIL 64
P+ A +E + K+P LLS MD+ A +L E+ + L
Sbjct: 345 PVKAEAEKPVEKQPDLLS---MDDPAPMVSELEEKNALAL 381
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 8 NSTEKLSSENVISDSKIPIS---ASSEAGIHKKPTLLSSDKMDNDANAQEKLTERK 60
+S+E+ S E D K P SS+ + + SSD+ D + + EK+T +K
Sbjct: 298 SSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKK 353
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLL 41
NST S+ VI+D K+ A S H+K LL
Sbjct: 489 NSTSPSESDQVINDEKVRTLAVSGKEKHQKERLL 522
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLL 41
NST S+ VI+D K+ A S H+K LL
Sbjct: 489 NSTSPSESDQVINDEKVRTLAVSGKEKHQKERLL 522
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 25.8 bits (54), Expect = 8.9
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
+S L+S ++I + S KP L S+ + N + L+ T +LP K
Sbjct: 111 SSGSSLASSDLIEVKNLVDSPGIVPSAQSKP-LFSTPSLPNPVS---DLSSAHTRLLPPK 166
Query: 68 MTQSKTVTKHPG 79
T S+ + PG
Sbjct: 167 STPSRRARRSPG 178
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,443
Number of Sequences: 28952
Number of extensions: 71743
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 15
length of query: 127
length of database: 12,070,560
effective HSP length: 73
effective length of query: 54
effective length of database: 9,957,064
effective search space: 537681456
effective search space used: 537681456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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