GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
         (127 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.3  

>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 8  NSTEKLSSENVISDSKIPIS 27
          +S E + +E   SDSK+P S
Sbjct: 4  DSLEIVKNEEFDSDSKLPFS 23


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 51  NAQEKLTERKTMILPDKMTQSKTVTK 76
           N ++ L      ++P ++TQ    TK
Sbjct: 763 NVEQTLNHEIKKVIPGRITQKSCSTK 788


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.125    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,702
Number of Sequences: 317
Number of extensions: 732
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 127
length of database: 114,650
effective HSP length: 50
effective length of query: 77
effective length of database: 98,800
effective search space:  7607600
effective search space used:  7607600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)