GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   0.69 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   0.91 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   1.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   1.6  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   2.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   2.8  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   4.8  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   4.8  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.4  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.4  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    24   8.5  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 2   ANTTVLNSTEKLSSENVISDSKIPISASSEAGIHK--KPTLLSSDKMDNDANAQEKLTER 59
           A    L    +L+SE  I   ++ +  + E  +    + +  S DK+ NDA     +   
Sbjct: 522 AMAPALEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDKLRNDAEENRNILSS 581

Query: 60  KTMILPDKMTQSKTVTKH 77
           K  +L D   + K V+K+
Sbjct: 582 KLKVLSDLKGEKKDVSKN 599


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 11  EKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANA 52
           +K S EN  +  K   +   E    K  ++L S+  DNDANA
Sbjct: 181 KKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDNDANA 222



 Score = 24.6 bits (51), Expect = 4.8
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 11 EKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKT--MILPDKM 68
          E L SE + S+S  P++ S      KK    S+   DND+N   K  + +    ++P K 
Sbjct: 17 ESLQSE-IESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEVDEEVVPVKK 75

Query: 69 TQSKTVTK 76
            SK   K
Sbjct: 76 KPSKKSKK 83


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 11  EKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTM 62
           ++L++E + ++ K   SA S    + +PT  SS  +D+DANA     ERK M
Sbjct: 127 KELTNEQLDTNEKYLQSALS----YTQPTEDSSSLLDSDANAVMMSWERKIM 174


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERK 60
            + ++TVLNS+  ++S +V+ +S  PI++S+       P   SS    + A     +    
Sbjct: 3048 ITSSTVLNSSTPITSSSVL-NSSTPITSSTALNT-STPITSSSVLNSSTAITSSSIVNSS 3105

Query: 61   TMILPDKMTQSKT 73
            T I    +  S T
Sbjct: 3106 TPITSSSVLNSST 3118



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1   MANTTVLNSTEKLSSENVISDSKIPISASS 30
           + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 600 ITSSTVLNSSTPITSSSVL-NSSTPITSST 628



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1   MANTTVLNSTEKLSSENVISDSKIPISASS 30
           + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 804 ITSSTVLNSSTPITSSSVL-NSSTPITSST 832



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASS 30
            + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 1092 ITSSTVLNSSTPITSSSVL-NSSTPITSST 1120



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASS 30
            + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 1392 ITSSTVLNSSTPITSSSVL-NSSTPITSST 1420



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASS 30
            + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 2232 ITSSTVLNSSTPITSSSVL-NSSTPITSST 2260



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASS 30
            + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 2520 ITSSTVLNSSTPITSSSVL-NSSTPITSST 2548



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/30 (36%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 1    MANTTVLNSTEKLSSENVISDSKIPISASS 30
            + ++TVLNS+  ++S +V+ +S  PI++S+
Sbjct: 2820 ITSSTVLNSSTPITSSSVL-NSSTPITSST 2848


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 27  SASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKTV 74
           ++S+E G +   +  SS++ D+  +  E    R+T++LP K T SK +
Sbjct: 92  ASSAEGGSNSAAS--SSEEEDSSDSEYEMELRRRTLLLPPKFT-SKVI 136


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 15  SENVISDSKIPISASSEAGIHKKPTLLSSDKMDND 49
           S+ V+S  K+PI     AG   +P L +S+ ++ +
Sbjct: 90  SQEVLSLQKLPIKGRRPAGRRGRPALNTSNSLERN 124


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 9   STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKT 61
           S   L + + +S S   +S+S  +GI   PT LS   + N      +++ R+T
Sbjct: 428 SYNALENRSELSASPGSVSSSRHSGIFATPTFLSPWNIKNIPLVTPEVSTRQT 480


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 3   NTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTL----LSSDKMDNDANAQEKLTE 58
           +TT  NST  LSS +  SD    I ++       K T     +S     +   ++EK+  
Sbjct: 137 DTTRRNSTSNLSSVSTNSDKSRTIGSNYNMLQSTKSTASQRRMSDSSTPSTTKSKEKIFS 196

Query: 59  RKTMILPDKMTQSKTVTKHP 78
            K +  P +   S    + P
Sbjct: 197 PKALSSPTQGASSNVTPESP 216


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 3   NTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEK 55
           NT V+ +TE +S+ NV+S      S + +A      T  +  K   D +  EK
Sbjct: 55  NTQVVENTEDISASNVVSAEGAEAS-TGDASTQSPETSENVVKNSVDESVAEK 106


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 9   STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMD 47
           S   ++  + +S  KIP SASS A    K TL S  + D
Sbjct: 110 SNTSVAGSDSVSRDKIPFSASSRAS-STKSTLSSVKETD 147


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 14  SSENVISDSKIPISASSEAGIH--KKPTLLSSDKMDNDANAQEKLTERKTMI 63
           + E  I+++K  +S S E  +   K+   +  DK+D  AN +  + E+K  +
Sbjct: 355 NDEKRINNAKTELSLSLEKKLEAKKQKEKVYKDKLDELANLETMVLEKKKAV 406


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.125    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,028
Number of Sequences: 5004
Number of extensions: 15004
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 19
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)