Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
(127 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 31 0.37
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 2.0
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 28 2.6
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 28 2.6
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 27 4.6
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 27 4.6
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 27 6.1
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 6.1
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531... 27 6.1
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 30.7 bits (66), Expect = 0.37
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQE--KLTERKTMILP 65
+ST KLS ++ DSK +S AG KK +S + D + ++ K K M+ P
Sbjct: 390 DSTGKLSKQSSKDDSKSSTRKASGAGSSKKQQKISLKQKDETDSKEDTAKDLSLKEMVSP 449
Query: 66 DKMTQSKTVTK 76
+++ TK
Sbjct: 450 KSVSKGSAKTK 460
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 24 IPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMI---LPDKMTQSKTVTKH 77
+ S SE H+K + K+D A +E+LT+ K + L D + KT T++
Sbjct: 1431 VEASLKSEIDRHRKININIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQKTTTEN 1487
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.9 bits (59), Expect = 2.6
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 3 NTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSD--KMDNDANAQEKLTERK 60
N + +ST K +S+ V+ D K+PI ++K L SS+ K N +KL +
Sbjct: 455 NNNITSST-KGNSKTVLDDDKLPIPNEEFNPVNKSTNLNSSEQIKYINIDEIMKKLNKTG 513
Query: 61 TMIL--PDKMTQSKTVTKHP 78
+ + PD+ ++ +T P
Sbjct: 514 HVPINPPDETEKNSALTDSP 533
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 30 SEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMI 63
SEA I + P L +SD+ D DA +E ER ++
Sbjct: 631 SEATIPENPRLPNSDENDMDAGGEEAKQERHLVL 664
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTE-RKTMILP 65
S+ K +S+ V+ D K+PI + E K T+L+S + N E +T+ KT +P
Sbjct: 508 SSPKGNSKTVLDDDKLPI-PNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVP 564
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 6 VLNSTEKLSSENVISDSK--IPISASSEAGIHKKPTLLSSDKMDNDA 50
VL+ST+ ++++SD K + +SAS + PTL SS K+ N A
Sbjct: 530 VLSSTKV--DQDLVSDRKSFLSVSASPHLSPMQDPTLCSSPKIHNKA 574
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 16 ENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEK 55
E + +IP+ E KKP + K + + +A+E+
Sbjct: 153 ETAVVSGEIPVQVLEEHEPEKKPAIAMESKQERERDAEER 192
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 STEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTE-RKTMILP 65
S+ K +S+ ++ D K+PI + E K T+L+S + N E +T+ KT +P
Sbjct: 483 SSPKGNSKTILDDDKLPI-PNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVP 539
>02_05_0761 -
31550936-31551020,31551641-31552666,31553083-31553117,
31554921-31555039,31555215-31555331,31556131-31556205,
31556885-31557017
Length = 529
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 6 VLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMD 47
++N+ L + +++S++P+ AG H K + KM+
Sbjct: 83 LINAGRILENNRTLAESRVPVGEVPGAGYHSKTVVSCPPKMN 124
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,582
Number of Sequences: 37544
Number of extensions: 80603
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 14,793,348
effective HSP length: 74
effective length of query: 53
effective length of database: 12,015,092
effective search space: 636799876
effective search space used: 636799876
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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