Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001253-TA|BGIBMGA001253-PA|undefined
(127 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 29 1.2
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 28 2.0
SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8) 28 2.0
SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3) 28 2.7
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 27 3.6
SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44) 27 4.7
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 26 8.3
SB_51053| Best HMM Match : Gp5_C (HMM E-Value=0.00055) 26 8.3
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 26 8.3
SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7) 26 8.3
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 4 TTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKL 56
T LN +K+SS+ + + + A G+ +KP+L+S ++ + KL
Sbjct: 32 TLDLNDIKKMSSDEDVMAIRRLLKAGRNLGLGEKPSLISDEEAEEKYRGDTKL 84
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 2 ANTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQ 53
+N T+ ST+ +S S + IP +A ++A PT + D A+ Q
Sbjct: 656 SNATIPRSTDAQASRQATSTATIPSAADAQASKPTTPTSATPIATDKQASKQ 707
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 2 ANTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKT 61
+N+T+ ST+ +S S+S IP S ++A + T ++ DA A T T
Sbjct: 548 SNSTIPRSTDAQASRAATSNSTIPRSTDAQAS--RPATSNATIPRSTDAQASRAATSNST 605
Query: 62 MILPDKMTQSKTVTKH 77
+ S+ T +
Sbjct: 606 IPRSTDAQASRAATSN 621
Score = 27.1 bits (57), Expect = 4.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 2 ANTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSD-KMDNDANAQEKLTERK 60
+N+T+ ST+ +S S++ +P SA ++A +PT ++ DA A + T
Sbjct: 620 SNSTIPRSTDAQASRPATSNATVPRSAETQA---TRPTTSNATIPRSTDAQASRQATSTA 676
Query: 61 TMILPDKMTQSKTVT 75
T+ SK T
Sbjct: 677 TIPSAADAQASKPTT 691
>SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)
Length = 296
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 9 STEKLSSENVIS-DSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
S E L + V++ + +I SA++ H+KP L K++ND Q+ +++ +
Sbjct: 163 SAEVLKTRRVLAKEDEIKASANTNV-FHEKPKLSDITKINNDRQHQQGRRQKQQQPQQQQ 221
Query: 68 MTQSKTVT 75
T+ K T
Sbjct: 222 RTKKKLKT 229
>SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 8 NSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDK 67
+S +S+ I+D I SASS + I +PT+ + ++ + + L
Sbjct: 68 SSDSSYNSDLTITDGNITSSASSYSSISPEPTVPDQEFTHSNPTVHSAVKQSHIATLSTP 127
Query: 68 MTQSKTVTKHP 78
++ ++T T+ P
Sbjct: 128 VSCAETQTQQP 138
>SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)
Length = 486
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 7 LNSTEKLSSENVISDS-KIPISASSEAGIHKKPTLLSSD 44
++S E+LS E SD+ +I ++ASS GI KKPT L ++
Sbjct: 291 MDSIEELSEEEDESDNAQIRVAASS--GIEKKPTELHAN 327
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 11 EKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQ 70
++LS +++I ++ I + +G H L + + A KLT K+ K+T
Sbjct: 1638 DRLSRDDLIGETTIDLEQRLLSGYHATCGLPKT-YFNKSATRYAKLTSSKSATHNTKLTS 1696
Query: 71 SKTVTKH 77
SK+ T++
Sbjct: 1697 SKSATRY 1703
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 6 VLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDA---NAQEKLTERKTM 62
V + +K S ++ P + S +H +P L + D+ +A+++L R+TM
Sbjct: 121 VETAPDKEDSRSLFITIHQPFAVRSLTKVHARPILSAKFVFDDYIRCMSARQRLQRRRTM 180
Query: 63 ILPDKMTQSKTVTKHPGM 80
+ DK+ + + P M
Sbjct: 181 LKQDKLHNIAQLLELPAM 198
>SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)
Length = 520
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 30 SEAG-IHKKPTLLSSDKMDNDANAQEK-LTERKTMILPDKMTQSKTVTKHPGM 80
S++G + K+ + DK + N EK L++RK +I+PD+ S + P M
Sbjct: 448 SDSGFVLKEAEKFARDKTNEAVNQLEKHLSDRKNLIIPDEENMSPKNRQVPVM 500
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 2 ANTTVLNS-TEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERK 60
++TT L+S T LSS++ S S+S + T LSSD +++ +
Sbjct: 293 SDTTFLSSDTTLLSSDSTFLSSDTTFSSSDSTFVSSDTTFLSSDTTSLSSDSTLLILRHN 352
Query: 61 TMIL 64
+IL
Sbjct: 353 LLIL 356
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 14 SSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPD 66
SSE++ + S P +++S P L ++K + N + K T+ + +LPD
Sbjct: 304 SSESLATTSSSPTTSASITA-SSSPVLQQAEKEASCVNVETKETKTASGLLPD 355
>SB_51053| Best HMM Match : Gp5_C (HMM E-Value=0.00055)
Length = 199
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 14 SSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTMILPDKMTQSKT 73
S+ N SDS +++S + + S+ D+D+N+ T T + +T + T
Sbjct: 102 SNSNSNSDSDSDSNSNSNSNSNSNSNSNSNSDSDSDSNSNSNSTVTATATVTVTVTVTAT 161
Query: 74 VT 75
VT
Sbjct: 162 VT 163
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 3 NTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSDKMDNDANAQEKLTERKTM 62
N T EK ++ + + + A++ G+H TL S +A + K+ + T
Sbjct: 1234 NATKRPEEEKNATALPTTGANATLVATTATGLHANVTLASPTGTYVNATKEPKVDQNATA 1293
Query: 63 ILPDKMTQSKTVTKHP 78
+ + + +VT P
Sbjct: 1294 VPTSRENATSSVTSQP 1309
>SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)
Length = 289
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 MANTTVLNSTEKLSSENVISDSKIPISASSEAGIHKKPTLLSSD 44
+A + + N EK S I+ ++ PIS +G P L S+D
Sbjct: 232 IAKSNIRNYVEKPISSTTIASTQFPISFMLTSGPLAAPVLSSND 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,063
Number of Sequences: 59808
Number of extensions: 106554
Number of successful extensions: 281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 23
length of query: 127
length of database: 16,821,457
effective HSP length: 74
effective length of query: 53
effective length of database: 12,395,665
effective search space: 656970245
effective search space used: 656970245
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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