Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001252-TA|BGIBMGA001252-PA|undefined
         (282 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31460.1 68417.m04470 ribosomal protein L28 family protein ri...    43   3e-04
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu...    31   1.2  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    30   1.5  
At1g31070.2 68414.m03804 UDP-N-acetylglucosamine pyrophosphoryla...    29   4.6  
At1g31070.1 68414.m03803 UDP-N-acetylglucosamine pyrophosphoryla...    29   4.6  
At5g26760.2 68418.m03189 expressed protein                             28   6.1  
At5g26760.1 68418.m03188 expressed protein                             28   6.1  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   6.1  
At5g51270.1 68418.m06356 protein kinase family protein contains ...    28   8.1  
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    28   8.1  
At2g34250.1 68415.m04190 protein transport protein sec61, putati...    28   8.1  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   8.1  

>At4g31460.1 68417.m04470 ribosomal protein L28 family protein
           ribosomal protein YmL14 precursor, mitochondrial -
           Saccharomyces cerevisiae,PIR2:S50921
          Length = 212

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 42/86 (48%)

Query: 87  GIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHY 146
           G++ G  +  G +  +D   +    W P ++   + S + ++H+ V VT   +  I+   
Sbjct: 46  GLYAGRHIQYGNRVSEDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAG 105

Query: 147 GFDHYLLKTPACDLVSVLALKLKKQI 172
           G D YLLKTP   + + + L  K ++
Sbjct: 106 GIDEYLLKTPYQKMDTEMGLYWKTKV 131


>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
           putative similar to preprotein translocase secA subunit,
           chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
           thaliana]; non-consensus GA donor splice site at exon 4
          Length = 1022

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 102 DDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHYGFDHYLLKTPACDLV 161
           D+ +R+V +Y+  + K+     EVLN+      T+R  +L++D    +  +++     + 
Sbjct: 774 DEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSD--SLEPLIIEYAELTMD 831

Query: 162 SVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWYEAL 220
            +L   +            P+ ++D +K +   ++Y   L+  TP+ ++  G + YE L
Sbjct: 832 DILEANIGPD--------TPKESWDFEKLIAKVQQYCYLLNDLTPDLLKSEGSS-YEGL 881


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
            protein, putative similar to kinesin like protein
            GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 218  EALSKVAKLKEAANKPIPLKNVYR----KNLVEKLKSAGIESKSSSADEISAT---TSWL 270
            EA  KV KLK      I   N       +N +E L+++  +   +  DE SA+     W 
Sbjct: 1224 EAYKKVDKLKRKYETEISTVNQQHNAEPQNPIESLQASCNDDAMAKYDEPSASDGDNQWR 1283

Query: 271  SKMNPFGKKDE 281
             +  PF KKDE
Sbjct: 1284 EEFQPFYKKDE 1294


>At1g31070.2 68414.m03804 UDP-N-acetylglucosamine
           pyrophosphorylase-related low similarity to SP|P43123
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           {Saccharomyces cerevisiae}
          Length = 505

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 219 ALSKVAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKSSSADEIS 264
           AL+       A   P P+ +  R+ LVE+LK  G E   S  DE+S
Sbjct: 12  ALTAATTTTTAVTSPPPMASSPRQALVERLKDYGQEDIFSLWDELS 57


>At1g31070.1 68414.m03803 UDP-N-acetylglucosamine
           pyrophosphorylase-related low similarity to SP|P43123
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           {Saccharomyces cerevisiae}
          Length = 153

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 219 ALSKVAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKSSSADEIS 264
           AL+       A   P P+ +  R+ LVE+LK  G E   S  DE+S
Sbjct: 12  ALTAATTTTTAVTSPPPMASSPRQALVERLKDYGQEDIFSLWDELS 57


>At5g26760.2 68418.m03189 expressed protein
          Length = 735

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 140 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILT 174
           ++++D YG ++ + K P C +   L+ KLK  + T
Sbjct: 312 AMMSDGYGVEYSVSKQPQCSMEDSLSCKLKGDLQT 346


>At5g26760.1 68418.m03188 expressed protein
          Length = 430

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 140 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILT 174
           ++++D YG ++ + K P C +   L+ KLK  + T
Sbjct: 7   AMMSDGYGVEYSVSKQPQCSMEDSLSCKLKGDLQT 41


>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 158  CDLVSVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWY 217
            CDL      ++K  IL+ L            K+++ +   + +LSS   E+   +GL   
Sbjct: 1215 CDLAGRQDEEIK--ILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNEFGLWDA 1272

Query: 218  EALSKVAKLKEAANKPIPLKNVYRK--NLVEKLKSAGIESKSSSADEISATTSWL 270
            EA S    L+ +A + + L+N  ++   + E LK   + +K++  ++I  T  +L
Sbjct: 1273 EATSFYFDLQISAVREVLLENKVQELTGVCENLKDEAV-TKTTEINQIKETVGFL 1326


>At5g51270.1 68418.m06356 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 819

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 167 KLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWY---GLTWYEALSKV 223
           K++   L  L+  CP H     + ME              + I W+    + W E  S +
Sbjct: 509 KIRHPHLVLLLGACPDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAW-EVASAL 567

Query: 224 AKLKEAANKPI------PLKNVYRKNLVEKLKSAGIESKSSSADEISATTSWLSKMNPFG 277
             L ++   PI      P   +   N V K+   G+ +   +AD +S   +   + +P G
Sbjct: 568 VFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVG 627


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 149 DHYLLKTPACDLVSVLALKLKKQILTELMNGCPRHAYDPKKQME 192
           DH+  + P  DL+S++   L  +  T  + G  R AY P    E
Sbjct: 113 DHWTSRCPQKDLLSLMDEPLTAETSTSTITGTGRAAYVPPSMRE 156


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 52  FVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINE 86
           FV   G+WK  E +G++ P+  +   +  PA  ++
Sbjct: 320 FVNLLGQWKESEYSGQSIPVSGLAYLITAPASFSD 354


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 232 KPIPLKNVYRKNLVEKLKSAGIESKSSSADEISATTSWLSKMNPFGKKD 280
           KP+ L NVYRK    ++KS+     SSS  E SAT +   +    G+KD
Sbjct: 129 KPVFL-NVYRKTKGIRIKSSKAVDGSSSVTEKSATDTVKVQDVVVGQKD 176


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,854,428
Number of Sequences: 28952
Number of extensions: 287309
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 12
length of query: 282
length of database: 12,070,560
effective HSP length: 80
effective length of query: 202
effective length of database: 9,754,400
effective search space: 1970388800
effective search space used: 1970388800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)