Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001252-TA|BGIBMGA001252-PA|undefined
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28... 34 0.020
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 5.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 5.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.3
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 9.2
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.2
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.2
>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 176
Score = 34.3 bits (75), Expect = 0.020
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 82 AEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISL 141
++ + ++GG G K + W+P + S VL + VT R +
Sbjct: 25 SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84
Query: 142 INDHYGFDHYLLKTPACDLVSV 163
I+ G D YL+K+ L S+
Sbjct: 85 IDKEGGLDEYLVKSTPSRLKSL 106
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 243 NLVEKLKSAGIESKSSSADEISATTSWLSKMNP 275
N+VE S+ S SSS+ +S+TTS S P
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATP 141
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 191 MEIYEEYKTYLSSYTPEEIEWYGLTWYEALSKVAKLKEAANKPIPL 236
+E +E TYL S E I WYEA V + E P+PL
Sbjct: 329 VENKKEVLTYLISKVEEAITEANAQWYEAQGTV-PVVENEKPPLPL 373
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 5.3
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 144 DHYGFDHYLLKTPACDLVSVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSS 203
DH L T D + LKK EL+N +H + + + +I + +K YL +
Sbjct: 397 DHRELQEVLEATNIGDRLQKALYVLKK----ELLNAQLQHKINKEIEQKITQRHKEYLLT 452
Query: 204 YTPEEIE---WYGLTWYEAL-SKVAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKSSS 259
++I+ L EAL ++ K E+ + P +K V+ L K +E ++
Sbjct: 453 EQLKQIKRELGQELDSKEALVTEFKKRTESLSMPDHVKKVFNDEL---SKFQHLEPMAAE 509
Query: 260 ADEISATTSWLSKMNPFGKK 279
+ W++++ P+GK+
Sbjct: 510 FNITRNYLDWITQL-PWGKR 528
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 21 GRFEIGIASELPPAYKKFWREWKVLKPAAVHFVP 54
GR IG A L K W++LK +VH+VP
Sbjct: 91 GRLHIGHA--LNKILKDIINRWQLLKGRSVHYVP 122
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 74 IPIPLKFPAEINEGIWGGEAVVKG 97
I +PL AEI +G+ EAV KG
Sbjct: 1890 IIVPLAAGAEIRQGLTASEAVAKG 1913
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 186 DPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWYEA--LSKVAKLKEAANKPIPLKNVY--- 240
D + +E +++ + ++ +E Y L+W A L++ A LK A + PI + + +
Sbjct: 168 DDQTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILK-AKDSPILIVDQFFPW 226
Query: 241 RKNLVEKLKSAGIESK 256
+ +L + K GIE++
Sbjct: 227 KGHLFDIEKELGIENQ 242
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 227 KEAANKPIPLKNVYRKNLVEKLKSAGIESKSSSADEISATTSWLSKMNPFGKKDE 281
+E KP+P V K+ +KLK E K ++ D + K P G+ ++
Sbjct: 187 EEILEKPVPKDEVAEKHSKDKLKKEEKE-KKTAVDVSDSVNGKKRKTEPAGEGEQ 240
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 146 YGFDHYLLKTPAC-DLVSVLALKLKKQILTELMNGCPRHAYDPKKQM 191
Y FD+ L+ A LVSVLA +KQ L+ +N + + K+ +
Sbjct: 497 YEFDNALIFYKASISLVSVLAPAAQKQFLSNYLNSIQGFSTETKEDL 543
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 113 VPVLKRTVVRSEVLNTHLSVTVTDRTISLIND 144
VP+LKR + + L+V +TD L+ D
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 255 SKSSSADEISATTSWLSKMNPFGKKDE 281
++S + I A SW+ ++N F KK E
Sbjct: 117 AESDTGSSIEAQDSWVYQLNSFNKKIE 143
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,507
Number of Sequences: 5004
Number of extensions: 57006
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 11
length of query: 282
length of database: 2,362,478
effective HSP length: 72
effective length of query: 210
effective length of database: 2,002,190
effective search space: 420459900
effective search space used: 420459900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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