Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001252-TA|BGIBMGA001252-PA|undefined
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0788 - 21523998-21524412,21525421-21525620 40 0.002
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 32 0.45
02_01_0243 - 1601977-1602834,1602857-1603063 31 1.4
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 30 2.4
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 29 3.2
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 29 4.2
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 29 4.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 28 7.4
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 28 7.4
>07_03_0788 - 21523998-21524412,21525421-21525620
Length = 204
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 87 GIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHY 146
GI+ G + G + +D + W P ++ + S + + H+ V VT + I+
Sbjct: 47 GIYAGRHIQFGNKVSEDGGNKSRRTWKPNVQEKRLFSYIHDRHIRVKVTTHALRCIDKAG 106
Query: 147 GFDHYLLKTPACDLVSVLALKLKKQI 172
G D YLLKTP + + + + K +I
Sbjct: 107 GIDEYLLKTPYNKMDTEMGVAWKAKI 132
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 32.3 bits (70), Expect = 0.45
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 172 ILTELMNGCP--RHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLT---WYEALSKVAKL 226
I EL+NG P +P++ +I+E TP+E+ W G+T WY +
Sbjct: 242 IFAELLNGKPILTGKNEPEQLSKIFE------LCGTPDELIWPGVTKMPWYNNFKPQRPM 295
Query: 227 KEAANKPIPLKNVYRKNLVEKLKSAGIESKSSSADEISATTSW 269
K + + + +L+EK+ + + S+ D + A W
Sbjct: 296 KRRVKESFKHFDQHALDLLEKMLTLDPSQRISAKDALDAEYFW 338
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 172 ILTELMNGCPRHAYDPK-KQMEIYEEYKTYLSSYTPE 207
+L MNGCP YD K K+M E +Y Y PE
Sbjct: 302 VLLVAMNGCPSFLYDTKGKRMVTGELLSSYQRFYLPE 338
>01_06_0705 +
31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 57 GKWKRDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVL 116
G WK DE ++ I +PL F +I GE + + +R +PH W P
Sbjct: 191 GSWKNDEAATKSLAIDGYSVPL-FKVKIT----SGELFL-----HESVKRAIPHSWDPSA 240
Query: 117 KRTVVRSEVLNTHLSVTVTDRTISLINDH 145
+ + + + SVTV + I H
Sbjct: 241 LASFIENYGTHIITSVTVGGKDEVYIKQH 269
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 77 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 134
PLK + E +W + V+ G + R + YW ++ V+ S S+
Sbjct: 141 PLKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDP 200
Query: 135 TDRTIS 140
R I+
Sbjct: 201 VPRIIT 206
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 157 ACDLVSVLALKLKKQILTELM---NGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYG 213
A DLV + +L KQ L L+ P + D +Q ++ + YK +S+ ++++ Y
Sbjct: 347 ASDLVMLKRFRLIKQSLIMLVISDKWWPVYCNDNMEQAQLVK-YKLTDNSWW-KQVD-YI 403
Query: 214 LTWYEALSKVAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKSSSADEISA 265
L++ E + + ++ + + L N +VEK+K+A + +S +E SA
Sbjct: 404 LSFTEPIYSMMRVTDTEEPRLHLINEMWNTMVEKVKAAIYKHESREPEEESA 455
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 77 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 134
PLK + E +W + V+ G D R + YW + ++ S S+
Sbjct: 144 PLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDP 203
Query: 135 TDRTIS 140
R I+
Sbjct: 204 LPRIIT 209
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 186 DPKKQ-MEIYEEYKTYL----SSYTPEEIEWYGLTWYEALSKVAKLKEAANKPIPLKNV 239
D K+Q ME+ E +K Y+ ++ P I+ LT YE ++K+ + +A+N I + +V
Sbjct: 124 DIKRQVMEVMERHKRYMIDDIATKLPTTIDPRILTLYEKVTKLVGIDKASNDLIKMLSV 182
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 77 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 134
PLK + E +W + VV G + R + YW + V+ S S+
Sbjct: 139 PLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDP 198
Query: 135 TDRTIS 140
R I+
Sbjct: 199 IPRIIT 204
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,554
Number of Sequences: 37544
Number of extensions: 340363
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 11
length of query: 282
length of database: 14,793,348
effective HSP length: 81
effective length of query: 201
effective length of database: 11,752,284
effective search space: 2362209084
effective search space used: 2362209084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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