GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001252-TA|BGIBMGA001252-PA|undefined
         (282 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical ...   119   2e-27
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    31   0.69 
U00049-5|AAM22032.1|  195|Caenorhabditis elegans Hypothetical pr...    31   0.92 
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL132948-40|CAD57708.1|  753|Caenorhabditis elegans Hypothetical...    28   6.5  
AL132948-39|CAD31833.2|  750|Caenorhabditis elegans Hypothetical...    28   6.5  

>AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical
           protein T25D3.2 protein.
          Length = 310

 Score =  119 bits (287), Expect = 2e-27
 Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 23/270 (8%)

Query: 27  IASELPPAYKKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINE 86
           +   LP  YK  + E  +     VH+ P   ++  D        ++  PI      E ++
Sbjct: 41  VVHRLPEHYKTRYWETILSDKTPVHYRPPTSRFAHDSFKNVEIELEENPIIGIRTPEGDD 100

Query: 87  GIWGGEAVVKGFQKRDD--RRRRVPHYWVP-----VLKRTVVRSEVLNTHLSVTVTDRTI 139
           G+WGGE VVKG+ +     +++ +P YWVP      LK  V+ SE+L+ ++ VTVT+R +
Sbjct: 101 GLWGGERVVKGWIESAPYTKKKILPRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERAM 160

Query: 140 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKT 199
            LI++H+G D+Y+L++   DL S  A  LK+++L  L         D KK   I E+Y  
Sbjct: 161 RLIDEHFGLDYYILESKEIDLDSKFANSLKREMLLTLTTESYYEENDEKKAY-IKEKYAD 219

Query: 200 YLSSYTPE-EIEWYGLTWYEALSKVAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKSS 258
           ++    PE E EW GL   EA  K   + E +  P PLK  + ++L+E+L+  G +  S 
Sbjct: 220 FV---IPEREAEWIGLELNEAARKQQDM-EDSTAPEPLKYKFEQSLLERLRD-GTDEISQ 274

Query: 259 SADEISATTSWLSK---------MNPFGKK 279
             +   A     SK         +NP GKK
Sbjct: 275 ELENPEAPMKTESKFGDKMFGKYLNPIGKK 304


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 32  PPAYKKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINEGI 88
           P  Y+ FW  W +L    V F     K+  D    E Y +    I + FP  +++ I
Sbjct: 131 PYQYENFWSRWNLLVFLVVCFFSHLPKYLWDGFLYEVYIVNGQLICINFPTTLDQAI 187


>U00049-5|AAM22032.1|  195|Caenorhabditis elegans Hypothetical
           protein C18F10.9 protein.
          Length = 195

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 232 KPIPLKNVYRKNLVEKLKSAGIESKSSSADEISATTSWLSKMNP-FGKKD 280
           K I LKNV RK ++ K+KS+   +    +   S  T    ++NP FGK D
Sbjct: 90  KTITLKNVSRKRMMFKIKSSSTNTYLKVSKRYSLITFSSFRINPVFGKID 139


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 36  KKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNI 74
           K F  E KV+ P  VHFV +    K +E+TGE   ++ +
Sbjct: 422 KPFNIEEKVIFPVEVHFVSKIRDEKTEEITGEKNVVKTL 460


>AL132948-40|CAD57708.1|  753|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 179 GCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWYEALSKVAKL--KEAANKPIPL 236
           G  R   +PKKQ+ +  ++ + L+   P     + +    AL+K  ++  +EA N  +  
Sbjct: 132 GARREEKEPKKQIPMINKHGSILNRNLPGMTNMFKVMAESALAKTDEMIKQEAMNNTV-- 189

Query: 237 KNVYRKNLVEKLKSAGIESKSSSADEISAT 266
           + V +   ++     G+E++ S  D  S T
Sbjct: 190 EEVEKGRKLDNSSRFGLENEESDQDGQSDT 219


>AL132948-39|CAD31833.2|  750|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43a protein.
          Length = 750

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 179 GCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWYEALSKVAKL--KEAANKPIPL 236
           G  R   +PKKQ+ +  ++ + L+   P     + +    AL+K  ++  +EA N  +  
Sbjct: 129 GARREEKEPKKQIPMINKHGSILNRNLPGMTNMFKVMAESALAKTDEMIKQEAMNNTV-- 186

Query: 237 KNVYRKNLVEKLKSAGIESKSSSADEISAT 266
           + V +   ++     G+E++ S  D  S T
Sbjct: 187 EEVEKGRKLDNSSRFGLENEESDQDGQSDT 216


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,090,408
Number of Sequences: 27539
Number of extensions: 297322
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 12,573,161
effective HSP length: 81
effective length of query: 201
effective length of database: 10,342,502
effective search space: 2078842902
effective search space used: 2078842902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)