GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001252-TA|BGIBMGA001252-PA|undefined
         (282 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.061
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     29   0.061
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.57 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.57 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.061
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 200 YLSSYTPEEIEWYGLTWYEALSK-VAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKS- 257
           YLS   P+ ++++G    + + + +       + P  +K++Y    V KL+ A   SK  
Sbjct: 319 YLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF-IKDIYET--VIKLEGASFRSKPY 375

Query: 258 ----SSADEISATTSWLSKMNPFGKKDE 281
                + D +   T W S +NP+ KK E
Sbjct: 376 RFGIQNGDYVVLETEWSSFINPWTKKLE 403


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 0.061
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 200 YLSSYTPEEIEWYGLTWYEALSK-VAKLKEAANKPIPLKNVYRKNLVEKLKSAGIESKS- 257
           YLS   P+ ++++G    + + + +       + P  +K++Y    V KL+ A   SK  
Sbjct: 25  YLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF-IKDIYET--VIKLEGASFRSKPY 81

Query: 258 ----SSADEISATTSWLSKMNPFGKKDE 281
                + D +   T W S +NP+ KK E
Sbjct: 82  RFGIQNGDYVVLETEWSSFINPWTKKLE 109


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 188 KKQMEIYEEYKTYLSSYTPEEIEWYGLT 215
           K  ++ Y +YK  L  YT EE+ + G++
Sbjct: 422 KTILDYYHKYKENLPKYTTEELNFPGVS 449


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 188 KKQMEIYEEYKTYLSSYTPEEIEWYGLT 215
           K  ++ Y +YK  L  YT EE+ + G++
Sbjct: 48  KTILDYYHKYKENLPKYTTEELNFPGVS 75


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/23 (26%), Positives = 17/23 (73%)

Query: 192 EIYEEYKTYLSSYTPEEIEWYGL 214
           ++++E+K  L  YT +++++ G+
Sbjct: 410 DVFQEHKNTLPQYTVQQLDFPGI 432


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 235 PLKNVYRKNLVEK 247
           P+KNVY+ N+  K
Sbjct: 32  PIKNVYKNNIETK 44


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,258
Number of Sequences: 429
Number of extensions: 3598
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 282
length of database: 140,377
effective HSP length: 57
effective length of query: 225
effective length of database: 115,924
effective search space: 26082900
effective search space used: 26082900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)