GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   4.2  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 117 TCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATP 166
           T   Q+    ++ +    + P   Q  ++A  +PPP   +   H   ATP
Sbjct: 247 TATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATP 296


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 150 PPPAPPHDKAHSNAATPT 167
           PP +P  DK+  N  +P+
Sbjct: 681 PPESPTRDKSKQNEKSPS 698



 Score = 20.2 bits (40), Expect = 9.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 138 PNGQAREAAGWTPPPAPPHDKAHSNAATPTDVRDV 172
           P     EAA  TP   P      S +  P + RD+
Sbjct: 45  PAPPEEEAASPTPGDVPTPSSPRSISEDPLNCRDL 79


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 128 SLIVERDSCPPNGQAREAAGWTPP-----PAPPHDKAHSNAATP 166
           +L +   S P +       G  PP     P PPH  +H    TP
Sbjct: 209 ALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHPAIVTP 252


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 128 SLIVERDSCPPNGQAREAAGWTPP-----PAPPHDKAHSNAATP 166
           +L +   S P +       G  PP     P PPH  +H    TP
Sbjct: 101 ALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPPHLSSHPAIVTP 144


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,399
Number of Sequences: 317
Number of extensions: 1457
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)