Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
(174 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 31 0.13
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 28 0.88
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 1.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 1.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 1.5
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 27 2.0
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 26 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.6
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 3.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 4.7
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib... 25 6.2
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 6.2
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 30.7 bits (66), Expect = 0.13
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 138 PNGQAREAAGWTPPPAPPHDKAHSNA 163
PN Q ++ W PPP P H K H +
Sbjct: 36 PNVQHQQPTYWYPPPPPRHHKEHKKS 61
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 27.9 bits (59), Expect = 0.88
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 51 GLVNVEMVQRHAKTFISLAA-----RDYEFTLYS--SSTLAACSIAAALRGLEHDGYLSR 103
GL+ ++ + +TF S AA R Y L +ST + SI A RGL H G L
Sbjct: 299 GLMTSVLIHPNGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDG 358
Query: 104 LQELTRIDLDCLQTCLEQIEDMVQSLIVERDSCPPNG 140
+ L + C+ +E + + + S PNG
Sbjct: 359 NERLVKFANALEHACVRCVEKGIMTKDLYLLSKSPNG 395
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 43 LLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYSSSTLAACSIAAAL--RGLEHDGY 100
LLS+L L + + H I+L FT+ +++L+ C A G++HD +
Sbjct: 575 LLSQLRRVNLATLSAIITHLNRLITLTPNKETFTINLANSLSLCISRPATWNLGIQHDKH 634
Query: 101 LSRLQE 106
++ E
Sbjct: 635 PTKFME 640
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 101 LSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERD 134
L LQELTR D C+++IE++ + + V RD
Sbjct: 1263 LGSLQELTRWR-DTFYDCIQKIEELEKQIDVARD 1295
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 1.5
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 52 LVNVEMVQRHAKTFISLAARDYEFTLYSSSTLAACSIAAA---LRGLEHDGYLSRLQELT 108
L N+ Q+H+ + + A YS S L A + AA LR L ++++ +
Sbjct: 644 LNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGESLLFTKMESIR 703
Query: 109 RIDLDCLQTCLEQIEDMVQSLIVERDS 135
I+LD +T ++ I V +ER S
Sbjct: 704 PINLDDFKTSIKVIRPSVNLQGLERYS 730
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.0
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 58 VQRHAKTFISLAARDYEFTLYSSSTLAACSIAAALRGLE------HDGYLSRLQELTRID 111
V + A T+I+ + R LYS T+AA + AL E DG L E +++
Sbjct: 178 VTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEKNEINLSTTTDG-LPVWMEESQVS 236
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATP 166
+ ++ L I+ + + + + + P + + A P P + S ATP
Sbjct: 237 YEDVKGVLTLIDSLYKKINPSKQALPIDQKNGSHASSVAPGTPSSLASVSTQATP 291
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 137 PPNGQAREAAGWTPPPAPPHDKAHSNAA 164
PP A E + PPPA P A S+AA
Sbjct: 112 PPTVPAYETSSEFPPPAYPEAAATSDAA 139
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 137 PPNGQAREAAGWTPPPAPPHDKAHSNAATPTDVR 170
PP G + PPP PP A + P R
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 100 YLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERDSCP-----------PNGQAREAAGW 148
Y ++L++L R+ Q L+ E Q + ER++ P+G+ E G
Sbjct: 633 YTAKLEDLMRVGGPIRQRYLDAEEAKRQKVQAEREAAKAATKSEAEKQKPSGKFEEGTGG 692
Query: 149 TPPPAPPHDK 158
PP PP ++
Sbjct: 693 RAPPPPPAEE 702
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 135 SCPPNGQAREAAGWTPPPA-PPHDKAHSNAATP 166
SCPP + T PP PPH H+N P
Sbjct: 159 SCPPFPPTQHHHPHTRPPHHPPHPHFHNNNYPP 191
>SPBC29A3.02c |his7||phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
His7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 93 RGLEHDGYLS-RLQELTRIDLDCLQTCL 119
RGL + G S +Q L ID+DC + CL
Sbjct: 250 RGLWYKGASSGAVQHLIHIDVDCDEDCL 277
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 131 VERDSCPPNGQAREAAGWTPPPAP-PHDKAHSNAATP 166
VE+D+C +A + +PPP+P P+DK S P
Sbjct: 15 VEKDTCAAAIKAYQYL-ISPPPSPIPNDKVASTVDVP 50
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,403
Number of Sequences: 5004
Number of extensions: 26868
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 12
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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