Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
(174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124... 40 8e-04
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 37 0.008
08_02_1018 + 23640889-23641245,23641868-23641954,23642063-236421... 35 0.041
06_01_0803 + 6030742-6031038,6031228-6031314,6031620-6031821,603... 33 0.096
09_04_0441 + 17626285-17626620,17626726-17626812,17627195-176272... 31 0.51
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 31 0.67
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 30 0.89
01_01_1194 + 9525196-9525900 30 1.2
12_02_1226 - 27182423-27182768,27182855-27183765 29 1.6
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 1.6
04_04_0702 + 27383876-27384862 29 1.6
04_03_0062 - 10581175-10581879 29 1.6
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 29 2.7
10_08_0445 + 17989438-17990895 29 2.7
08_02_1598 + 28130385-28130881,28130957-28131269 28 3.6
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 28 3.6
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 28 3.6
04_04_1695 + 35433975-35437040 28 3.6
04_04_1404 + 33302080-33303341,33303435-33305307 28 3.6
02_01_0381 - 2764331-2764342,2768966-2769907 28 3.6
12_02_1174 - 26696869-26698191 28 4.8
12_01_0725 + 6428572-6428817 28 4.8
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 28 4.8
05_05_0281 + 23810828-23810918,23811011-23811109,23811284-23811318 28 4.8
02_02_0376 + 9551050-9551525,9551966-9552278 28 4.8
01_05_0327 + 20984336-20985478 28 4.8
10_08_0153 - 15240707-15241019,15241269-15241723 27 6.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 6.3
09_01_0003 - 95371-95433,95485-95715,95809-95862,96730-96972,985... 27 6.3
08_02_1461 - 27299891-27301870 27 6.3
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331... 27 6.3
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318... 27 6.3
04_03_0093 - 11085882-11087339 27 6.3
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 6.3
05_03_0481 + 14556223-14556762,14556848-14556928,14559532-145597... 27 8.3
>03_05_0329 -
23211636-23211857,23211946-23212079,23212170-23212476,
23212760-23213113
Length = 338
Score = 40.3 bits (90), Expect = 8e-04
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVLS L W +A VT D+LP L SRL R V + I AA +
Sbjct: 171 ELLVLSTLDWRMAAVTPFDYLPCLSSRL--RRHVGGGGGAGASAALIFSAAEAASVLDHR 228
Query: 80 SSTLAACSIAAALRG-LEHDGYLSRLQELT 108
ST+AA ++ AA G L + S++ L+
Sbjct: 229 PSTVAAAAVLAATHGALTREALESKMSGLS 258
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 37.1 bits (82), Expect = 0.008
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRL----------PIRGLVNVEMVQRHAKTFISLA 69
ELLVLS L W + VT DFLP SRL G V +A FI
Sbjct: 188 ELLVLSTLGWRMGAVTPFDFLPCFSSRLHRHHHGGAGAAGHGAAAAARVALNAVGFIFAT 247
Query: 70 ARDYEFTLYSSSTLAACSIAAALRG 94
A Y ST+AA +I AA G
Sbjct: 248 AEAGSVLDYRPSTVAAAAILAASYG 272
>08_02_1018 +
23640889-23641245,23641868-23641954,23642063-23642161,
23642255-23642456,23642569-23642690,23642942-23643226
Length = 383
Score = 34.7 bits (76), Expect = 0.041
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVL+ L W + VT ++ L +L + R ++ + +AA F +
Sbjct: 198 ELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAA-GTGFLEFR 256
Query: 80 SSTLAACSIAAALRGLEHDGYLSR--LQELTRIDLDCLQTCLEQIED 124
S +AA ++AA + G E G + + T +D + C E I+D
Sbjct: 257 PSEIAA-AVAATVAG-EATGVVEEDIAEAFTHVDKGRVLQCQEAIQD 301
>06_01_0803 +
6030742-6031038,6031228-6031314,6031620-6031821,
6031926-6032047,6032226-6032447
Length = 309
Score = 33.5 bits (73), Expect = 0.096
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
EL VL+ LKW + VTA F+ L + + + R +S + EF ++
Sbjct: 145 ELAVLNALKWRMQAVTACSFIDYYLHKFNDDDTPSTSALSRSVDLILS-TCKVAEFLVFR 203
Query: 80 SSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERDS 135
S +AA AL E + + + + C E I+D + + R S
Sbjct: 204 PSEIAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKIIMRNIMRQS 259
>09_04_0441 +
17626285-17626620,17626726-17626812,17627195-17627293,
17627431-17627632,17627735-17627832,17628050-17628298
Length = 356
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVLS LKW + VT ++ L L + ++ + + AR E +
Sbjct: 191 ELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCI-ARGTECLGFR 249
Query: 80 SSTLAACSIAAALRGLEHDGY 100
S +AA ++AAA+ G EH +
Sbjct: 250 PSEIAA-AVAAAVVGEEHAAF 269
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 30.7 bits (66), Expect = 0.67
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
EL+VL +L W + VT F+ ++ G + + R + +S A + EF +
Sbjct: 212 ELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSRILALRACQIILS-AIHELEFLNHC 270
Query: 80 SSTLAACSIAAAL 92
+S++AA ++ A+
Sbjct: 271 ASSMAAAAVLFAV 283
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 127 QSLIVERDSCPP-NGQAREAAGWTPPPAPPHDKAHSNAATPTD 168
Q+ + E D PP G A E AG PP PP S P +
Sbjct: 48 QATVAEGDPPPPATGSAEEVAGNGEPPQPPATDPASEPTAPPE 90
>01_01_1194 + 9525196-9525900
Length = 234
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 136 CPPN-GQAREAAGWTPPPAPPHDKA 159
CPPN A +A GW PP P D A
Sbjct: 89 CPPNYALAGDAGGWCNPPRPHFDMA 113
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 131 VERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAA 164
V++D+C P + A TP +PP +K ++ AA
Sbjct: 172 VQKDNCVPPAAPKPAVPATPSTSPPSNKEYAPAA 205
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 150 PPPAPPHDKAHSNAATPTDV 169
PPP PPH H A +P D+
Sbjct: 119 PPPPPPHSDDHLRALSPHDI 138
>04_04_0702 + 27383876-27384862
Length = 328
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 143 REAAGWTPPPAPPHDKAHSNAATPTDVR 170
R A W PPP PP AHS AA+ T+ R
Sbjct: 202 RGAELWAPPPPPP---AHSAAASTTNKR 226
>04_03_0062 - 10581175-10581879
Length = 234
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 120 EQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDK 158
E+ E+ ++VE+ + G E G+TP P+P H++
Sbjct: 84 EEGEEEEVEIVVEKTTGEAAGSRAETPGYTPTPSPGHNE 122
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 119 LEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPP 155
L Q++ + + + PP QA +AAG PPP PP
Sbjct: 453 LPQVQPQIGATAALGGTQPPT-QANQAAGSFPPPPPP 488
>10_08_0445 + 17989438-17990895
Length = 485
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 145 AAGWTPPPAPPHDKA-HSNAATPTDVRDV 172
A TPPP+PPH +A + A P RDV
Sbjct: 409 ATNMTPPPSPPHVRAPPAPARRPWRTRDV 437
>08_02_1598 + 28130385-28130881,28130957-28131269
Length = 269
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 129 LIVERDSCPPN-GQAREAAGWTPPPAPPHD 157
++ + CPPN GQ+ + GW PP D
Sbjct: 114 VVTATNLCPPNPGQSNDNGGWCNPPREHFD 143
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 135 SCPPNGQAREAAGWTPPPAPPHDKAHSNAATPTDVR 170
S P + QAR AA PP+PP + + A+P +R
Sbjct: 447 STPSSSQARTAAA-PAPPSPPEPPSPRDPASPPSLR 481
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 136 CPPN-GQAREAAGWTPPPAPPHDKA 159
CPPN G + GW PP P D A
Sbjct: 101 CPPNYGLPSDDGGWCNPPRPHFDMA 125
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 137 PPNGQAREAAGWTPPPAPPHDKAHSNAATP 166
PP + E PPPA PH +A + A P
Sbjct: 153 PPQSVSAEQPDSRPPPAFPHGEAQAQAQPP 182
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 135 SCPPNGQAREAAGWTPPPAPPHDKAHSNAAT 165
S P + Q + G TPPP+PP + A++
Sbjct: 343 SRPADAQGKRKLGGTPPPSPPRGGGAARASS 373
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 137 PPNGQAREAAGWTPPPAPP 155
PP+ A EAA PPP PP
Sbjct: 50 PPSSSAAEAASDLPPPPPP 68
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 135 SCPPNGQAREAAGWTPPPAPPHDKAHSNAATPT 167
S PP Q WTPPPA + A A PT
Sbjct: 300 SPPPPPQQPSQRYWTPPPAITPEPAKPAAGKPT 332
>12_01_0725 + 6428572-6428817
Length = 81
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 128 SLIVERDSCPPNGQAREAAGWTPPPAPPHD 157
S +VE C ++ A W P P P HD
Sbjct: 51 SPVVEPSGCCSGHRSEAVASWCPNPTPCHD 80
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 150 PPPAPPHDKAHSNAATPTDVRD 171
PPP PP + + TP D+ D
Sbjct: 28 PPPPPPEQQQQAGTTTPDDIDD 49
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLV 53
EL +L L+W +A VT FLP+ + R L+
Sbjct: 174 ELTLLKALRWRLACVTPFSFLPVTTTTTTTRALL 207
>05_05_0281 +
23810828-23810918,23811011-23811109,23811284-23811318
Length = 74
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 30 DVAGVTAHD---FLPLLLSRLPIRGLVNVEMVQRH 61
D+A V A LPLL+S +P+ G+V++ Q+H
Sbjct: 7 DLAAVLAMSCLLLLPLLVSSVPVSGIVHLSSQQQH 41
>02_02_0376 + 9551050-9551525,9551966-9552278
Length = 262
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 126 VQSLIVERDSCPPNGQA-REAAGWTPPPAPPHDKA 159
V I + CPPN ++ GW PP P D A
Sbjct: 104 VSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMA 138
>01_05_0327 + 20984336-20985478
Length = 380
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 122 IEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAA 164
I+ ++ L+ + D PP+ A ++ PPP PP A + +A
Sbjct: 43 IDHLLDPLLNQDD--PPSSSASSSSPQAPPPPPPRSSAAAASA 83
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 130 IVERDSCPPN-GQAREAAGWTPPPAPPHD 157
I + CPPN A + GW PP P D
Sbjct: 101 ITATNLCPPNWALANDDGGWCNPPRPHFD 129
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 55 VEMVQRHAKTFISLAARDYEFTL-YSSSTLAACSIAAALRGLE--HDGYLSRLQELTRID 111
++ V+ K I+LA R E ++ S L + R L +D ++ L E T+++
Sbjct: 1577 LDEVETGRKNEIALAKRIEELSMRISEMELEMQDASVDKRDLSNAYDSIVTEL-ECTKLN 1635
Query: 112 LDCLQTCLEQIEDMVQSLIVERD 134
DC ++IED +Q ER+
Sbjct: 1636 FDCCMEEKQKIEDTLQECTEERN 1658
>09_01_0003 -
95371-95433,95485-95715,95809-95862,96730-96972,
98544-99317
Length = 454
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 2 AAQSDRSMKLDKAWEPSWELLVLSKL---KWDVAGV-TAHDFLPLLLSRLPIRGLVNVEM 57
A Q R + + W P+ E+L+L + + + V TA + P+L RL + L ++
Sbjct: 73 AKQQKRPLPFQRTWSPNDEVLILEAMAAHRQEHGKVPTAAELFPVLNGRLDRKRLTYKKL 132
Query: 58 VQRHAKTFISLAARD 72
+ +TF+ RD
Sbjct: 133 ADK-LRTFMRRHGRD 146
>08_02_1461 - 27299891-27301870
Length = 659
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 82 TLAACSIAAALRGLEHDGYLSRLQELTRI--DLDCLQTCLEQIEDMVQSL----IVERDS 135
++ SI A R HDGY + L + DLD + + + +L + E D+
Sbjct: 396 SIGIVSIVPARRWSLHDGYSTELDPVAAAADDLDTTSSFSGPLSGTLIALTLKNVPEMDA 455
Query: 136 C-PPNGQAREAAGWTPPPAPP 155
NG + E PPP PP
Sbjct: 456 AGEENGHSPEIREADPPPPPP 476
>07_01_0436 +
3317334-3317423,3317561-3317908,3317996-3318331,
3318384-3318442,3318640-3318709,3319259-3319579
Length = 407
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 38 DFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYSSSTLAAC 86
D L L++SRLPI + ++ R K RD+ +S +T +C
Sbjct: 31 DVLGLIISRLPIGDAIRTGLISRQWKDL----WRDHTMLTFSRATFPSC 75
>07_01_0418 -
3186093-3186437,3187286-3187438,3187541-3188398,
3188479-3188541
Length = 472
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 38 DFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS-SSTLAACSIAAALR 93
D L ++SRLPI+ ++ H K I + + EF+ YS S LA+ S A LR
Sbjct: 22 DILIGIISRLPIKEAARTSILSSHWKK-IWCSHVNLEFSFYSMSPRLASTSHDARLR 77
>04_03_0093 - 11085882-11087339
Length = 485
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 124 DMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATPT 167
D + S IV ++S P R W PPHD H AT T
Sbjct: 61 DQISSAIVAKNSAAPIRTLRLVDLW-----PPHDALHQAVATAT 99
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 124 DMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAH----SNAATPTDVRDV 172
D V + ++ + PP +A PPPAPP +H S A PT+ +V
Sbjct: 104 DAVPAAVLRENMAPPEERAPP-----PPPAPPPKSSHVVVFSRQADPTEKENV 151
>05_03_0481 +
14556223-14556762,14556848-14556928,14559532-14559798,
14559933-14559992,14560811-14560942,14561026-14561199,
14562769-14562919,14563651-14563790,14565656-14565787,
14565866-14566000,14566098-14566304,14567376-14567540
Length = 727
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 47 LPIRGLVNVEMVQR-HAKTFISLAARDYEFTLYSSSTLAACSIAAALRGLEH 97
L R L+N E V+ + F L +YE+ Y+ + AC+ ++ L L H
Sbjct: 108 LGTRKLINREFVESPDGRKFEKLHLGEYEWDTYAEAFSRACNFSSGLIKLGH 159
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,485,360
Number of Sequences: 37544
Number of extensions: 213207
Number of successful extensions: 1438
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 45
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -