Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
(174 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_18400| Best HMM Match : MED7 (HMM E-Value=1.8) 30 0.91
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2) 30 1.2
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.2
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_59496| Best HMM Match : DUF1665 (HMM E-Value=4.1) 29 2.1
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) 29 2.1
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0) 28 3.7
SB_3238| Best HMM Match : Chorion_3 (HMM E-Value=1.6) 28 3.7
SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1) 28 4.9
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0) 27 6.4
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 27 6.4
SB_22089| Best HMM Match : Nsp1_C (HMM E-Value=3.6) 27 6.4
SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002) 27 6.4
SB_38714| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4) 27 8.5
SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29) 27 8.5
>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 19 WELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISL 68
WELLVL KLKWDV+ VT HDFL + SRLP+ ++++++HA TFI+L
Sbjct: 85 WELLVLGKLKWDVSAVTPHDFLDQIFSRLPL-DRSTLDVLRKHASTFIAL 133
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 75 FTLYSSSTLAACSIAAALRGLEHDGYLS---RLQELTRIDLDCLQTCLEQIEDMVQSLIV 131
FT + S LA + L L G+L+ +LQ+LTR++ L C D +
Sbjct: 122 FTQFKVSVLALAIFSQELESLSPSGWLAAVIKLQKLTRVEFGDLIRCHHLHTDKPVPIEA 181
Query: 132 ERDSCPPNGQA 142
DSC G A
Sbjct: 182 NSDSCEFEGAA 192
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 30.7 bits (66), Expect = 0.69
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 43 LLSRLPIRGLVNVEMVQRHAKT--FISLAARDYEFTLYSSSTLAACS--IAAALRGLEHD 98
+++ L GL ++ + +T F+ L AR + ++A I L+ LE
Sbjct: 1 MMAGLEEEGLDLESLIDQEFQTAGFVELCARPVSSLDRKAESIAESQGQIKTLLQNLEKQ 60
Query: 99 GYLSRLQELTRIDLDCLQTCLE-QIEDMVQSLIVERDSC----PPNGQAREAAGWTPPPA 153
L +LQE DL ++ + +I D + +++E D PPN AR P P
Sbjct: 61 --LKQLQEEDACDLSIIEAPDDNEIGDDKEVILIEDDDSEDLKPPNSNARGTPVSPPNPT 118
Query: 154 PP 155
PP
Sbjct: 119 PP 120
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 103 RLQEL-TRIDLDCLQTCLEQIEDMVQSLIVERDSC-PPNGQ 141
RLQEL TR+ LD L + ++ D +Q+ ++E + PP G+
Sbjct: 4234 RLQELRTRVVLDDLNQNIAKVSDWLQTSVIETEGLDPPRGK 4274
>SB_18400| Best HMM Match : MED7 (HMM E-Value=1.8)
Length = 303
Score = 30.3 bits (65), Expect = 0.91
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAP 154
L+ +Q ++ ++++ L++++ S PN + R PPAP
Sbjct: 33 LNSMQASMQSSNELLKELVIQKRSRSPNHEPRSKRSKANPPAP 75
>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 528
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 96 EHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERDSC 136
E ++ L+E +RI+++ LQ L Q +SL E DSC
Sbjct: 207 EKTARITELEEDSRIEMEQLQEKLNQERSAKESLAAEADSC 247
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 113 DCLQTCLEQIE-DMVQSLIVERDSCPPNGQAREAAGWTP 150
DC Q + + VQS + + CP NG E + WTP
Sbjct: 458 DCFQDDVTSCTGERVQSRLCQSQHCPVNGNYTEFSEWTP 496
>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 143 REAAGWTPPPAPPHDKAHSNAATPT 167
R A+ TPPP+P H A +++A+PT
Sbjct: 189 RLASTVTPPPSPTHGVASTHSASPT 213
>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 134 DSCPPNGQAREAAGWTPPPAPP 155
++CP + + A W PPP PP
Sbjct: 873 EACPGSPSVKPAIDWPPPPPPP 894
>SB_59496| Best HMM Match : DUF1665 (HMM E-Value=4.1)
Length = 184
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAP 154
L+ +Q ++ +++ L++++ S PN + R PPAP
Sbjct: 29 LNSMQASMQSSNKLLKELVIQKRSRSPNHEPRSKRSKANPPAP 71
>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
Length = 549
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAP 154
L+ +Q ++ ++++ L+ ++ S PN + R PPAP
Sbjct: 29 LNSMQASMQSSNELLKELVTQKRSRSPNHEPRSKRSKANPPAP 71
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 110 IDLDCLQTC--LEQIEDMVQSLIVERDSCPPNGQAREAAGWTPP 151
IDL TC LE + ++++ L++ PP Q + G TPP
Sbjct: 142 IDLTLFITCKDLESMTELLKVLVILYYPLPPGAQIIDRNGGTPP 185
>SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
Length = 1009
Score = 28.3 bits (60), Expect = 3.7
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 55 VEMVQRHAKTFISLAARDYEFTLYSSSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDC 114
++ V++H + F++ R ++ S S AC++ A DG R+ +
Sbjct: 164 IKAVKQHVEEFVT--TRMQNCSVASVSETIACAVLAPNC---KDGDPKPFLPCRRVCSEF 218
Query: 115 LQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAAT 165
L+ C ++ D L++ S PN A + PP H + AT
Sbjct: 219 LKRCNSRLPDYFVDLMIGMCSLLPNSTADTGMCYEPPQFDKHYNVTNLVAT 269
>SB_3238| Best HMM Match : Chorion_3 (HMM E-Value=1.6)
Length = 318
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 124 DMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATPTDVRDVH 173
D V S +DS P A AA P P+P AHS AA T + H
Sbjct: 252 DRVPSRRQSKDSAPAKVHAEGAA---PAPSPSTHAAHSMAAAGTGEKSDH 298
>SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)
Length = 647
Score = 27.9 bits (59), Expect = 4.9
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 2 AAQSDRSMKLDKAWEPSWELLVLSKLKWDVAGVT-AHD--FLPLLLSRLPIRGLVNVEMV 58
AA SD S + D W S + V S K + G T + D LPL+L+ G+V++ +
Sbjct: 7 AATSDISHQGDPVW--SCPVFVSSGTKRSMVGATLSRDKTTLPLVLTTQTCGGIVHIIVA 64
Query: 59 QRHAKTFISLAARDYEFTL 77
H+ FI D FTL
Sbjct: 65 VDHSPRFI--LYNDCPFTL 81
>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
Length = 375
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 140 GQAREAAGWTPPPAPPHDKAHSNAATPTDVRD 171
G +A+ +TPPP PP + + T+V D
Sbjct: 310 GHKYDASNYTPPPPPPTMEEYPTVPEVTEVDD 341
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 62 AKTFISLAARDYEFTLYSSSTLAACSIAAALRGL-EHDGYLSRLQELTRIDLDCLQTCLE 120
AK + L DY+ + S +AA S++ A+R + + + L+ + L TC++
Sbjct: 299 AKYLMELTLIDYQSIKFLPSEIAAASLSLAMRVMGKGSEWTPTLEHYSGYSEKKLSTCMQ 358
Query: 121 QIEDMV 126
++ +V
Sbjct: 359 RLAQLV 364
>SB_22089| Best HMM Match : Nsp1_C (HMM E-Value=3.6)
Length = 272
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAP 154
L+ +Q ++ ++++ L++++ S PN + PPAP
Sbjct: 33 LNSMQASMQSSNELLKELVIQKRSRSPNHEPLSKRSKANPPAP 75
>SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)
Length = 648
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 112 LDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAP 154
L+ +Q ++ ++++ L++++ S PN + PPAP
Sbjct: 296 LNSMQASMQSSNELLKELVIQKRSRSPNHEPLSKRSKANPPAP 338
>SB_38714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 119 LEQIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPP-----HDKAHSNAATPT 167
L + ++ L + R PPN G T PP+PP D+ HS AT T
Sbjct: 25 LSNLRSRLEDLALSR---PPNSDEDHGDGLTLPPSPPVDDFNLDEEHSCEATTT 75
>SB_50357| Best HMM Match : Toxin_8 (HMM E-Value=2.4)
Length = 304
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 125 MVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATPT 167
++Q L +E++SC + R PP PP + HS PT
Sbjct: 104 ILQQLSLEKESCNKSFTPR------PPSTPPSPRKHSRPCRPT 140
>SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29)
Length = 1017
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 132 ERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATPTDVR 170
E + P GQA + P P PP + ++TP + R
Sbjct: 960 EEHTAEPTGQADDTDEEWPSPQPPLPTISAESSTPANTR 998
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,456
Number of Sequences: 59808
Number of extensions: 216479
Number of successful extensions: 895
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 29
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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