Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
(174 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 38 0.004
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 38 0.005
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 31 0.45
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 30 1.0
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 30 1.0
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 30 1.0
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 30 1.0
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 29 1.4
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 29 1.4
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis... 28 4.2
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis... 28 4.2
U29244-6|AAY55902.1| 130|Caenorhabditis elegans Hypothetical pr... 28 4.2
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 5.5
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 5.5
AF016424-6|AAB65333.1| 366|Caenorhabditis elegans Transforming ... 27 5.5
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 5.5
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 5.5
U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical pr... 27 7.3
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1 MAAQSDRSMKLDKAWEPSWELLVLSKLKWDVAGVTAHDFLPLLLSRLP 48
+A SD S +D + WELL+++ L+W+ TA F L SR+P
Sbjct: 172 IAYYSDNSCPIDMILQ--WELLIVTTLQWETESPTAFSFFDFLASRIP 217
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1 MAAQSDRSMKLDKAWEPSWELLVLSKLKWDVAGVTAHDFLPLLLSRLP 48
+A SD S +D + WELL+++ L+W+ TA F L SR+P
Sbjct: 172 IAYYSDNSCPIDMILQ--WELLIVTTLQWETESPTAFSFFNFLASRIP 217
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 79 SSSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLEQIED 124
S+ST SI A RGL H G L + L L + C++ +E+
Sbjct: 346 STSTNPIASIFAWTRGLHHRGVLDNNEALKTFSLTLEKACIDTVEE 391
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 508 NGRSREESMSPPPPAPPPREASISSITDT 536
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 523 NGRSREESMSPPPPAPPPREASISSITDT 551
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 518 NGRSREESMSPPPPAPPPREASISSITDT 546
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 523 NGRSREESMSPPPPAPPPREASISSITDT 551
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 155 NGRSREESMSPPPPAPPPREASISSITDT 183
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 228 NGRSREESMSPPPPAPPPREASISSITDT 256
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 139 NGQAREAAGWTPPPAPPHDKAHSNAATPT 167
NG++RE + PPPAPP +A ++ T T
Sbjct: 523 NGRSREESMSPPPPAPPPREASISSITDT 551
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 78 YSSSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERDSCP 137
Y +ST A S A ++ + Q + + C Q C++Q + Q +DSC
Sbjct: 287 YDASTSAPASSQAVIQIVLQSSVAQSSQCTPQCEQSCQQQCVQQQQPAAQCQSACQDSCS 346
Query: 138 PNGQAREAA 146
+ QA + A
Sbjct: 347 SSCQAAQPA 355
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 29.5 bits (63), Expect = 1.4
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 44 LSRLPIRGLVNVEMVQRHA--KTFISLAARDYEFTLYS-------SSTLAACSIAAALRG 94
+S P+ L++ E Q+HA + F SL+ + FT + + A+ I +R
Sbjct: 4 VSPSPLIALISSECSQKHAHNRGFKSLSHFIFPFTSHECQVREPIDNLKASQRIRLDIRD 63
Query: 95 LEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERD 134
+ DG+L L L + + L+TC D+ QS+ + RD
Sbjct: 64 ISSDGHLLTLSVLPYVLIQALKTC----TDVSQSIKLFRD 99
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 29.5 bits (63), Expect = 1.4
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 44 LSRLPIRGLVNVEMVQRHA--KTFISLAARDYEFTLYS-------SSTLAACSIAAALRG 94
+S P+ L++ E Q+HA + F SL+ + FT + + A+ I +R
Sbjct: 4 VSPSPLIALISSECSQKHAHNRGFKSLSHFIFPFTSHECQVREPIDNLKASQRIRLDIRD 63
Query: 95 LEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERD 134
+ DG+L L L + + L+TC D+ QS+ + RD
Sbjct: 64 ISSDGHLLTLSVLPYVLIQALKTC----TDVSQSIKLFRD 99
>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
resistance related protein2 protein.
Length = 1525
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 15 WEPSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEM 57
W ++ + W GV A L +L+ LP+ GL+ ++M
Sbjct: 418 WSAPLQIFLSIYFLWKFLGVAALAGLVVLILALPVNGLIAIQM 460
>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
resistance protein familyprotein 2 protein.
Length = 1525
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 15 WEPSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEM 57
W ++ + W GV A L +L+ LP+ GL+ ++M
Sbjct: 418 WSAPLQIFLSIYFLWKFLGVAALAGLVVLILALPVNGLIAIQM 460
>U29244-6|AAY55902.1| 130|Caenorhabditis elegans Hypothetical
protein ZK1248.20 protein.
Length = 130
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 122 IEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNAATPTD 168
I D S++ + + ++ G T PAP D A ++AA P D
Sbjct: 15 ITDPTPSMLAKAGPDEKKDEPKDEKGETKSPAPDGDAAAADAAKPVD 61
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 133 RDSCPPNGQAREAAGWTPPPAPPHDKAHSNAAT-PTDV 169
R S PN A AA T P APP A +N AT PT V
Sbjct: 284 RRSVFPNKPAAAAAN-TTPIAPPRRSASANKATAPTSV 320
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 133 RDSCPPNGQAREAAGWTPPPAPPHDKAHSNAAT-PTDV 169
R S PN A AA T P APP A +N AT PT V
Sbjct: 284 RRSVFPNKPAAAAAN-TTPIAPPRRSASANKATAPTSV 320
>AF016424-6|AAB65333.1| 366|Caenorhabditis elegans Transforming
growth factor betafamily protein 2 protein.
Length = 366
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 121 QIEDMVQSLIVERDSCPPNGQAREAAGWTPPPAPP 155
+IE + + + D+ PP ++R +A TP APP
Sbjct: 209 KIEAFLVIALKDEDAGPPKKRSRRSASTTPISAPP 243
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 133 RDSCPPNGQAREAAGWTPPPAPPHDKAHSNAAT-PTDV 169
R S PN A AA T P APP A +N AT PT V
Sbjct: 284 RRSVFPNKPAAAAAN-TTPIAPPRRSASANKATAPTSV 320
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 133 RDSCPPNGQAREAAGWTPPPAPPHDKAHSNAAT-PTDV 169
R S PN A AA T P APP A +N AT PT V
Sbjct: 284 RRSVFPNKPAAAAAN-TTPIAPPRRSASANKATAPTSV 320
>U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical
protein F43C9.3 protein.
Length = 798
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 150 PPPAPPHDKAHSNAATPTDVRDVH 173
PPP PPH+K+ + P DV+
Sbjct: 3 PPPPPPHNKSSTMLRNPAKSVDVN 26
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,254,089
Number of Sequences: 27539
Number of extensions: 156537
Number of successful extensions: 798
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 26
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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