GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   3.8  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   3.8  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   3.8  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
          precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 43 LLSRLPIRGLVNVEMVQRHAKT 64
          +LSR+P +G+VN   +   A T
Sbjct: 58 ILSRIPEQGVVNWNKIPEGANT 79


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 43  LLSRLPIRGLVNVEMVQRHAKT 64
           +LSR+P +G+VN   +   A T
Sbjct: 106 ILSRIPEQGVVNWNKIPEGANT 127


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 43  LLSRLPIRGLVNVEMVQRHAKT 64
           +LSR+P +G+VN   +   A T
Sbjct: 106 ILSRIPEQGVVNWNKIPEGANT 127


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 43  LLSRLPIRGLVNVEMVQRHAKT 64
           +LSR+P +G+VN   +   A T
Sbjct: 106 ILSRIPEQGVVNWNKIPEGANT 127


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 133 RDSCPPNGQAREAAGWTPPPAPPH 156
           R +C   G     AG+ PP   PH
Sbjct: 296 RSACHSPGVYPSTAGFLPPSYHPH 319


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 114 CLQTCLEQIEDMVQSLIVERDSCPPN 139
           C+Q  LE +     + +V RD  P N
Sbjct: 14  CIQQILESVHHCHHNGVVHRDLKPEN 39


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 150  PPPAPPHDKAHSNAA 164
            PPP PP +   +N++
Sbjct: 1859 PPPPPPRNHDQNNSS 1873


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,088
Number of Sequences: 429
Number of extensions: 1739
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)