Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001251-TA|BGIBMGA001251-PA|IPR011028|Cyclin-like,
IPR004367|Cyclin, C-terminal
(174 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin... 45 2e-05
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 35 0.026
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 35 0.026
At5g02110.1 68418.m00132 cyclin family protein low similarity to... 33 0.11
At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical... 33 0.11
At1g48560.1 68414.m05430 expressed protein 33 0.11
At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to a... 31 0.43
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 31 0.56
At3g27470.1 68416.m03433 expressed protein contains Pfam profile... 29 1.3
At5g02260.1 68418.m00149 expansin, putative (EXP9) similar to ex... 29 1.7
At5g56320.1 68418.m07029 expansin, putative (EXP14) similar to a... 29 2.3
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 29 2.3
At2g28950.1 68415.m03521 expansin, putative (EXP6) similar to ex... 29 2.3
At1g62980.1 68414.m07112 expansin, putative (EXP18) identical to... 28 3.0
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 28 4.0
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 28 4.0
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 28 4.0
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 28 4.0
At3g08040.1 68416.m00982 MATE efflux family protein low similari... 28 4.0
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 27 5.3
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 27 5.3
At4g00895.1 68417.m00121 ATP synthase delta chain-related contai... 27 7.0
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi... 27 7.0
At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil... 27 7.0
At1g61080.1 68414.m06877 proline-rich family protein 27 7.0
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom... 27 9.2
>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
[Lycopersicon esculentum] GI:6434199; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 361
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVLS L W + VT F ++ R + +E + R +S+ D F +S
Sbjct: 174 ELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIP-DSRFLSFS 232
Query: 80 SSTLAACSIAAALRGL---EHDGYLSRLQELTRIDLDCLQTCLEQIED 124
S LA + + +R L + Y S+L L ++D + + C E + D
Sbjct: 233 PSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVLD 280
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 35.1 bits (77), Expect = 0.026
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELL+LS L+W + VT F ++ R + ++ ++ + IS+ A D F Y
Sbjct: 184 ELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIA-DTRFMRYF 242
Query: 80 SSTLAAC---SIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLE 120
S LA + L+ + Y S++ L +++ + + C E
Sbjct: 243 PSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYE 286
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 35.1 bits (77), Expect = 0.026
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELL+LS L+W + +T F+ ++ RL ++ + + + + + +S+ + D F Y
Sbjct: 175 ELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVIS-DSRFVGYL 233
Query: 80 SSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVER 133
S +AA ++ + ++ LS L + L+ + ++ D++ L V+R
Sbjct: 234 PSVVAAATMMRIIEQVDPFDPLSYQTNLLGV-LNLTKEKVKTCYDLILQLPVDR 286
>At5g02110.1 68418.m00132 cyclin family protein low similarity to
cyclin D3.1 from [Lycopersicon esculentum] GI:5679622,
[Nicotiana tabacum] GI:4160300; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 341
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
EL++L L+W V VT++ F L+S++ G+V M+ + D + Y
Sbjct: 166 ELIILKALEWRVNAVTSYTFSQTLVSKI---GMVGDHMIMNRITNHLLDVICDLKMLQYP 222
Query: 80 SSTLAACSI 88
S +A +I
Sbjct: 223 PSVVATAAI 231
>At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical to
SP|P42751 Cyclin delta-1 {Arabidopsis thaliana}
Length = 339
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVLS L W + VT DF+ ++ G + HA I ++ F Y
Sbjct: 170 ELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTF-LGFFISHATEIILSNIKEASFLEYW 228
Query: 80 SSTLAACSI 88
S++AA +I
Sbjct: 229 PSSIAAAAI 237
>At1g48560.1 68414.m05430 expressed protein
Length = 643
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 76 TLYSSSTLAACSIAAALRGLEHDGYLSRLQELTRIDLD-CLQTCLEQIEDMVQ 127
T +SST+ AC E DG+LS+ +E +++ + CL IEDM++
Sbjct: 241 TSSNSSTMKACETMVRRAVHEDDGHLSKSKECCQVEQNICLLNSEPSIEDMIE 293
>At4g01630.1 68417.m00212 expansin, putative (EXP17) similar to
alpha-expansin precursor GI:4027891 from [Nicotiana
tabacum]; alpha-expansin gene family, PMID:11641069
Length = 255
Score = 31.1 bits (67), Expect = 0.43
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 130 IVERDSCPPN-GQAREAAGWTPPPAPPHDKA 159
I + CPPN QA + GW PP P D A
Sbjct: 102 ITATNFCPPNFAQASDNGGWCNPPRPHFDMA 132
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 30.7 bits (66), Expect = 0.56
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLV++ L W + +T F+ + + I G V+ ++ R ++ FI + EF +
Sbjct: 185 ELLVVTTLNWRLQALTPFSFIDYFVDK--ISGHVSENLIYRSSR-FILNTTKAIEFLDFR 241
Query: 80 SSTL-AACSIAAALRG 94
S + AA +++ ++ G
Sbjct: 242 PSEIAAAAAVSVSISG 257
>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 398
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 94 GLEHDGYLSRLQELTRIDLDCLQTCLEQIEDMVQSLIVERDSCPPNGQAREAAGW-TPPP 152
G+EH L + + L+ Q LE E + + +RD + A E GW T P
Sbjct: 218 GVEHFDSEKYLAVVKKHGLEISQPGLEPYEGLTWEMTKKRDDTEVHKHAEERNGWCTDPN 277
Query: 153 APP 155
PP
Sbjct: 278 LPP 280
>At5g02260.1 68418.m00149 expansin, putative (EXP9) similar to
expansin precursor GI:4138914 from [Lycopersicon
esculentum]; alpha-expansin gene family, PMID:11641069
Length = 258
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 129 LIVERDSCPPN-GQAREAAGWTPPPAPPHDKA 159
LI + CPPN QA + GW PP D A
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLA 135
>At5g56320.1 68418.m07029 expansin, putative (EXP14) similar to
alpha-expansin 3 GI:6942322 from [Triphysaria
versicolor]; alpha-expansin gene family, PMID:11641069
Length = 255
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 136 CPPN-GQAREAAGWTPPPAPPHDKA 159
CPPN QA A GW PP D A
Sbjct: 106 CPPNFAQANNAGGWCNPPQHHFDLA 130
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
ELLVL+ L+W + VT ++ LS++ + + I+ + +F +
Sbjct: 157 ELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFR 216
Query: 80 SSTLAACSIAAALRGLEHDGYLSRLQELTRIDLDCLQTCLEQIE 123
+S +AA ++A ++ G EH S + ++ + ++ E IE
Sbjct: 217 ASEIAA-AVALSVSG-EHFDKFSFSSSFSSLEKERVKKIGEMIE 258
>At2g28950.1 68415.m03521 expansin, putative (EXP6) similar to
expansin GI:2828241 from [Brassica napus]; contains Pfam
profile PF01357: Pollen allergen
Length = 257
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 130 IVERDSCPPN-GQAREAAGWTPPPAPPHDKA 159
I + CPPN Q + GW PP P D A
Sbjct: 104 ITATNFCPPNFAQPSDNGGWCNPPRPHFDLA 134
>At1g62980.1 68414.m07112 expansin, putative (EXP18) identical to
SWISS-PROT:Q9LQ07 alpha-expansin 18 precursor
(At-EXP18)[Arabidopsis thaliana]; alpha-expansin gene
family, PMID:11641069
Length = 257
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 128 SLIVERDSCPPN-GQAREAAGWTPPP 152
+++ + CPPN GQA GW PP
Sbjct: 101 TVVTATNICPPNYGQASNNGGWCNPP 126
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRL-PIRGLVNVEMVQRHAKTFISLAARDYEFTLY 78
ELL+LS L W + +T + L+++ V+ ++V + + ++ FT Y
Sbjct: 161 ELLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEY 220
Query: 79 SSSTLAACSIAAALRGLEHDGYLSR 103
+AA + A D L+R
Sbjct: 221 RQFVVAAVTTLLASSSTSSDIRLTR 245
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 150 PPPAPPHDKAH 160
PPP PPHD AH
Sbjct: 35 PPPPPPHDMAH 45
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 150 PPPAPPHDKAH 160
PPP PPHD AH
Sbjct: 40 PPPPPPHDMAH 50
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 150 PPPAPPHDKAH 160
PPP PPHD AH
Sbjct: 35 PPPPPPHDMAH 45
>At3g08040.1 68416.m00982 MATE efflux family protein low similarity
to enhanced disease susceptibility 5 [Arabidopsis
thaliana] GI:16589070; contains TIGRfam profile:
TIGR00797: MATE efflux family protein, Pfam profile
PF01554 Uncharacterized membrane protein family
Length = 526
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 66 ISLAARDYEFTLYSSSTLAACSIAAALRGLEHDGYL 101
++ A D+ +T YS +AA SIAA + + +G++
Sbjct: 451 VNFGASDFAYTAYSMVGVAAISIAAVIYMAKTNGFI 486
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRL 47
ELLVL+KLKW + +T ++ L ++
Sbjct: 166 ELLVLNKLKWRLRAITPCSYIRYFLRKM 193
>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
protein [Arabidopsis thaliana] GI:509423
Length = 429
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 20 ELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYEFTLYS 79
E ++LS L+++++ T + FL L + + + ++ A I LA DYE Y
Sbjct: 289 EKIMLSTLQFNMSLPTQYPFLKRFL-----KAAQSDKKLEILASFLIELALVDYEMVRYP 343
Query: 80 SSTLAACSIAAA 91
S LAA ++ A
Sbjct: 344 PSLLAATAVYTA 355
>At4g00895.1 68417.m00121 ATP synthase delta chain-related contains
weak similarity to Swiss-Prot:P32980 ATP synthase delta
chain, chloroplast precursor [Nicotiana tabacum]
Length = 191
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 149 TPPPAPPHDKAHSNAA 164
TPPP P HDKA S A
Sbjct: 85 TPPPPPVHDKAASGFA 100
>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 597
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 63 KTFISLAARDYEFTLYSSSTLAACSIAAALRGLEHDGYLSR 103
+ I+L + +FT +SS A+ SIA+ G E GY+ R
Sbjct: 300 RKMIALGVKPEQFT-FSSCLCASASIASLRHGKEIHGYMIR 339
>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
HMM hit: AMP-binding enzymes PF00501
Length = 691
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 47 LPIRGLVNVEM-VQRHAKTFISLAARDYEFTLYSSSTLAACSIAAALRGLEH 97
L R L++ E+ KTF L DYE+ + + A C A+ L + H
Sbjct: 77 LGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIGH 128
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 135 SCPPNGQAREAAGWTPPPAPPHDKAHSNAATP 166
S PP +G PPP PP A N ATP
Sbjct: 576 SPPPMPMGNSGSGGPPPPPPPMPLA--NGATP 605
>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 446
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 130 IVERDSCPPNGQAREAAGWTPPPAPPHDKAHSNA 163
I+ D P G + PPP PPH + S++
Sbjct: 320 ILSGDVYKPQGNSSSQGVKKPPPPPPHTSSSSSS 353
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,124,063
Number of Sequences: 28952
Number of extensions: 152380
Number of successful extensions: 651
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 40
length of query: 174
length of database: 12,070,560
effective HSP length: 76
effective length of query: 98
effective length of database: 9,870,208
effective search space: 967280384
effective search space used: 967280384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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