GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
         (301 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    24   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.5  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 144 NYFGTVQ-TEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 202
           N+FG++Q   I+ H   ++ EW       R      +  +I+   RF+ + +V       
Sbjct: 125 NFFGSIQFIIISKHWVTIMKEWSFMEMSMRN-----YGSSINMKKRFVVMTSV--IMTLA 177

Query: 203 LGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCRNATVFIG 249
           LG      +S  +       P + L+F  AN+   +  C NAT++ G
Sbjct: 178 LGNPYCFNSSVYK-----VFPVEHLLFI-ANAFITSQSCENATLYSG 218


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 258 SLNEPSDFSEEPPNEVRVSIRPITG 282
           ++N P+  ++ PP   ++ +  +TG
Sbjct: 423 NVNSPASMNQTPPPTAQMGLDMVTG 447


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,725
Number of Sequences: 317
Number of extensions: 2277
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 301
length of database: 114,650
effective HSP length: 56
effective length of query: 245
effective length of database: 96,898
effective search space: 23740010
effective search space used: 23740010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)