Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001250-TA|BGIBMGA001250-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal, IPR006670|Cyclin
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 54 2e-08
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 51 2e-07
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 48 1e-06
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 39 8e-04
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 37 0.004
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 4.4
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 5.8
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 26 7.6
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q E+T MR ++ EW++E+ + E LA++ +DRFLS + S+ QL G LL
Sbjct: 161 QKELTWKMREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITALL 220
Query: 210 LASKLREPGSCALPADLLVFYTANSITLTDLC 241
+ASK E C V+ T + T+ D+C
Sbjct: 221 IASKYEEV-MCP-SIQNFVYMTDGAFTVEDVC 250
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 50.8 bits (116), Expect = 2e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 136 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 195
E + A NY +VQ EI R ++ +W+++V E LA++ +DRFLSI V
Sbjct: 175 ERKLAPPPNYM-SVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLFLAVNLIDRFLSIKVV 233
Query: 196 GKSQVQLLGTACLLLASKLRE 216
+VQL+G + LL+A K E
Sbjct: 234 SLQKVQLVGLSALLIACKYEE 254
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 150 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 209
Q E+ MR ++ +W++EV E LA++ +DRFLS+ +++QL+G A L
Sbjct: 228 QKELAWKMRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVGIAALF 287
Query: 210 LASKLRE 216
+ASK E
Sbjct: 288 IASKYEE 294
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 39.1 bits (87), Expect = 8e-04
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 135 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 194
T E+ + + Q E+ MR + +++E+ + PL+IS +D ++S
Sbjct: 106 TREKNFLLNVHLSNQQPELRWSMRPALVNFIVEIHNGFDLSIDTLPLSISLMDSYVSRRV 165
Query: 195 VGKSQVQLLGTACLLLASKLRE 216
V +QL+ CL +ASK E
Sbjct: 166 VYCKHIQLVACVCLWIASKFHE 187
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 148 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTAC 207
+ Q MR V W++ V E L+I+ LDRFLS+ V S+++L G
Sbjct: 165 SAQPYYVTEMRASVINWIVGVHTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATA 224
Query: 208 LLLASKLRE 216
L +A K E
Sbjct: 225 LFIACKYEE 233
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.6 bits (56), Expect = 4.4
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 153 ITPHMRRLVAEWMLEVCEDR-GCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLA 211
I PH L + + E ED C A S L +S GK +GT C+ +A
Sbjct: 295 IIPHENDLTVK-ITEKIEDLVNCLFLPLYFASSGLKTNISTLNTGKIWGYTIGTICVAIA 353
Query: 212 SKLREPGSCALPADLLVFYTANSITLTDL 240
SK+ GS L A +L ++S+ + L
Sbjct: 354 SKM---GSSMLAARILKMPWSDSLVVGSL 379
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 12 GRNLRAGLTGTALPPRRAAPIILLCSVGGRVSHRPLTATRALVVVATLRATLRRSLPTDQ 71
G ++ + AL + +LLC +G V RP T + + A ++ L D+
Sbjct: 74 GMDISPSMLSVALESQEIEGDLLLCDMGTGVPFRPGTFDGVISISA-----IQWLLNADK 128
Query: 72 LSSTP-RRTNHILRDAYVTVR 91
+ P RR N + Y++++
Sbjct: 129 TCNVPQRRLNRFFQTLYISMK 149
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 40 GRVSHRPLTATRALVVVATLRATLRRSLPTDQLSSTPRRTNHILRDAYVTVRINMELLCA 99
G H+ LT+ A+ +++T+R L D+LS+T R + +++++ N+
Sbjct: 375 GSSYHKSLTSDFAMKHY--IKSTIRSMLLNDKLSATQRSSLESFYTSFISLDKNLSSKFV 432
Query: 100 ERVSP 104
+++P
Sbjct: 433 NQITP 437
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,166
Number of Sequences: 5004
Number of extensions: 44183
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 8
length of query: 301
length of database: 2,362,478
effective HSP length: 72
effective length of query: 229
effective length of database: 2,002,190
effective search space: 458501510
effective search space used: 458501510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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